MmuINT0135411 @ mm9
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61264087-61264404:-
Coord C1 exon
chr11:61264330-61264404
Coord A exon
chr11:61264208-61264329
Coord C2 exon
chr11:61264087-61264207
Length
122 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTGTGCAATCCATCTCTCAGAAG
3' ss Score
5.86
Exon sequences
Seq C1 exon
CATCTGGATCTCTTAGTCCGAGACTCTTCCCATCATAATAAGTCAGGGCAAGGGCACGTGGGTGACATACTCCAG
Seq A exon
GTAAGCAGTGCAGAGGGAAGAGGCTGATGCCCAGGTGAAGGAGGCTGGGTGGGGTCCCAGGAGCGTGCTTACAGAGGGAGGCTGCTTCCTCAACTCAGAGATCTGTGCAATCCATCTCTCAG
Seq C2 exon
AAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACGGGCCCGCTGTTACCTCCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-Rnf112:NM_009548:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(24.5=100)
A:
NA
C2:
PF0226314=GBP=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGATCTCTTAGTCCGAGACT
R:
CCTCTGGGGCTGGCTTGG
Band lengths:
194-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: