MmuINT0135411 @ mm10
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61450585-61451034:-
Coord C1 exon
chr11:61450828-61451034
Coord A exon
chr11:61450706-61450827
Coord C2 exon
chr11:61450585-61450705
Length
122 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTGTGCAATCCATCTCTCAGAAG
3' ss Score
5.86
Exon sequences
Seq C1 exon
ATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGGTAAGACAATTTCTAGTTTCGTCAATCCTGACACACCAATCCCGGCTGCCGGTGTCAGGACCCTTTCTCTTCCAGCATCTGGATCTCTTAGTCCGAGACTCTTCCCATCATAATAAGTCAGGGCAAGGGCACGTGGGTGACATACTCCAG
Seq A exon
GTAAGCAGTGCAGAGGGAAGAGGCTGATGCCCAGGTGAAGGAGGCTGGGTGGGGTCCCAGGAGCGTGCTTACAGAGGGAGGCTGCTTCCTCAACTCAGAGATCTGTGCAATCCATCTCTCAG
Seq C2 exon
AAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACGGGCCCGCTGTTACCTCCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086:ENSMUST00000060255:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(24.5=100)
A:
NA
C2:
PF0226314=GBP=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATGGTACCAATCCAGGT
R:
GGAGCAGGGAGGAGGTAACAG
Band lengths:
246-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types