HsaINT0141228 @ hg38
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr3:49689499-49691247:+
Coord C1 exon
chr3:49689499-49689606
Coord A exon
chr3:49689607-49691129
Coord C2 exon
chr3:49691130-49691247
Length
1523 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
AGGCTCTGTGTCTGGCTCAGCCC
3' ss Score
4.26
Exon sequences
Seq C1 exon
GCTGGAGGCTCAGCGCGCAAGCGTGCGCGTGATTTGGCCCTGAACGGACGCCGTAGCCAAGAGGTTGGGCGGATGTTGTGAGCCGGGTCGCTGCGGCCGAGGCTCCGG
Seq A exon
GTGAGTGAGGGGCGGCAGGGCTCTGAGCCTGGCGGGTTCCGGCTATTCCCTTCGCGGTCCGGGCTAGTCCAGTGCGAGGGCACCTGCAGCGCAGGGATCTGGGTGCGAAACTCCGAGCGGAAGCTGGTCTGGCAGGTCCTGTGGAGCTTGGGGCCAGGCGGGGGCGACTTGGGGGAGCCATGCGCCGCCCTCGCCGTCCTTGGGCTCCCAGACGGAGTAGGTTCAGTTCTGAGTCCGGATACCCCGGCGGGGTTGGACGGGATAGCCGTGACAGGGAGTCCCCGGGCGGGGACAAGGTCCGCCTCTCACCTGGGTCCTCAGCAACTGACTCCCGGAGCCCACTCCGGGTGTCTGGAAGGTCTGCTCATCAAATGAATGACTGAGTTTAATCAGATCTTCAACTACTCTGGTAGTGAAGGGGCACCGATCATGGACGCCCACCGAGGGCCCGAGGTCGGGAAAATCACCTTCCCGAGGAGCAGGCGTGGTGCAGACCCACAAGGGTTTGTGGCGGGAGTAGAGGGTCTGTTTGGGGTGAGATAAGAGACTGAACTGCAGAGTAGGGAGTGCTGGCTAAGGCAGTGCTGCAGAGCGAAACTCTAGACCTGCGCTGTCTAATAGAACTTTATATGATGGTGGGAACGTTCTACCTTTGTGCTGTCCAACAGAGTAACCATTAGCCACATGTGGTCATTGAACTCTTGAAATGTGGCTAAGGCAACTGAGAAATCGAATTGTTAATTTTTAAAACTTTAAATTTAAGTAACCTCATGTGGATGACGGCTGCTGTGTTGGACAGCACCGCTACACATCAGTGAGGCCAGCACCAGGGACTCAGTGCAGGTTCTGGAGCAGCTGCAGCAGCAACATGATGTGAGGGATAGATGCACTAGGAGGACCAATGGAGTTTGCCATGAGGGCTGGGCAAGGGTGGTGCTTGGATGAGGTGGGAGGCCACATGTGTGAGTGGGAATGGTGAAACTATCAGGACCATGGATAAAAGAAGGGAGGAACCCAGGGCTGAGGAAAGAGGCTCCAGCCTTGTGGGGAGTAAGTGGGACTTATGGCTAGAGATGACCAGACCAGTGGTGGTCTGCACTTGGGGGAATGTGTAGGATTGTCGCTTCTGGTTGTGAGCTGGACTCAGTATGGCTTACAACTGAGATGGATACAGGGGCTCTGCCCCTAGGACACCTCACTTTGGACATTTTGGTCTGATTTCCACAGAGCTGAGACATTTTGTTATGGTTCGGCAAAAATATATCTAGTACCTGCTCTCTGCCCAGCCCTGTGCTGGGCACAGGGACACTGGAGAACAAGAAGTGGTCCCTGTTACATGGGCCTAGACCCTGGCTACCCTCCCTGTGTAGGAAGCTGGGAGCCCCTGCATTCCCCTGCCCTATGTGTTAGTGTGCATGCCCCTGGCCTCACCTGCTCCCAAGCCTTCCTGCCATGGCAGGACTGAGGTCAGGTGTGGGGGCCCCTGGCTGGCCCTGAGTAGACAGGCTCTGTGTCTGGCTCAG
Seq C2 exon
CCCCCAGGACCACTGGCTGCCCATGAGAGATGAAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAAGAGCTATAGGCTGACCTCAGATGCTGAGAAATCCAGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068:ENST00000327697:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.081
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTTGGCCCTGAACGGAC
R:
CTGTGACCCTGGATTTCTCAGC
Band lengths:
198-1721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development