RnoINT0127617 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116854981-116856548:-
Coord C1 exon
chr8:116856081-116856548
Coord A exon
chr8:116855099-116856080
Coord C2 exon
chr8:116854981-116855098
Length
982 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGA
5' ss Score
6.69
3' ss Seq
ACACTCTGCATCTGGCTCAGCCT
3' ss Score
3.14
Exon sequences
Seq C1 exon
TGAGAGGCGGCCTGGCTACGAGCCGGGCGGGTCCGGTGACTCCCTTCGAGGCCCCTGGCCGATCCAGTGCGACAGTGCCGCGGCCTGCGGTATAGGGCTCCCAGCGGGAGCTGGCCTGACAGGTCCTATGGAGCTTGGGGCCAAGTAGGGGCGACCTGGGGGAGCATGCGCTGCCCTTGACATCCTTGGCCACCCAGACTTAGTCGGTTCGGTTTCGAGCCTGGATCTCTTAGAAGGGCTGGGCAGTAATGGCGTGGCTGGGAGCCCTGGGGCAGACGCAGGTTCCGCCTCTAAATCCTCTACACTTGACACCCAGAGTGTGTGTCTGGAAGGTTGACTTCCAGTTCTTACTAACTGCGTCCAATAAGTCCAGCAATTGTTGCAATATAAGAGGGACTGGTTGTGGATGTCCATCGAGGGCCCCCGGAGGGCGGCACAGCGGCAGAATCACCTTCCCGAGCGAGCCTG
Seq A exon
GTATGATGCAGGCAGGCAAGGGTTTGTGGCGGGAGCTGAGGGCCCGTTTGGGGTGTGATAAGAGTAGGCTGCAGAAAAAGAAGTGCTTGCTCAGGCAGTGAATAAAGGCCAAGCTCTGGACAGGCGCTAATAGAACTTTCTGTGGCGGTGGCGGTGATGGCACACCTTGCCTTGCAGTTCAGTGCCGTCCTGTGTGAGCTCTGAATTCCCGAAGCTGAAAGTTTAGTTTTTAACTTTGTAAAGTTAACCACTCTTGGCTCCTGACTATGGTGTTGTGCAGCACACCTCTAGAGTGAGACAGACATCAGGGACTTAGTGCAGTTTCTGTAGCATCTGCAGCAATAGCATGCTACCTAAGGGATAGACAGCAGTATGAATACCTATAGAGTGATCTTGGCTAGGACAGTGATTGCATAGCATAGAAGGATATGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAGAAAGCTAATGAGACTGAAAATAAAAGGGAGGAAGCTTGGGCTTAGTGTGACATCTCTTACTTTCGGGGAATAAGAGGGATTTGAGGCTACAGGGAATGTGGTATAAGGTCTTGCCTTTTGACTATGACCTGGACTCCATGACTAAGGTGTAAATATAGGAGTTTTTACTCAAGGCCACCTCACTTTGAATATGTTAATCTGATTTCCCCAGAGCCAAGGCCTTTATGGTTCAGCAAAAACACTTTGCACTGGGTCTCTGCTAGGTCCTGTATGGGGCACTGAGACAGTGTGCAACATAGTGTCCCTGACAGCAGCCTAGATCCCATCCAACATCCCCGTGTGGAAAGCTGGGAGCCCTTGCTTACCCCTGCCCTAGGCCAGTATTGTGTGAATGTGCATGGCTCAGTCTCACCTGCTCCCAAGCCTTCCTACCATTTGCAGGACTGAGGTCTGTGTGGGCCTTTGACTAGCCTGGAGTAGACACTCTGCATCTGGCTCAG
Seq C2 exon
CCTCCAGGACCAGTGACTGCCGATGAGCGGTGAAAGATGACGTCCAAGGGGGCTGCCATGTCTTTCTCCCGAAAGAGCTATAGGTTGACCTCAGATGCTGAGAAGTCCAGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTAGAAGGGCTGGGCAG
R:
TGACCCTGGACTTCTCAGCAT
Band lengths:
358-1340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]