MmuINT1029921 @ mm10
Intron Retention
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:108077722-108083346:-
Coord C1 exon
chr9:108083266-108083346
Coord A exon
chr9:108077898-108083265
Coord C2 exon
chr9:108077722-108077897
Length
5368 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AAGCCTTCCTCCTATTGCAGGAC
3' ss Score
8.78
Exon sequences
Seq C1 exon
AAGGTATAGCACCAGGGCCCATGGCTATCCCCATCAGGATTCCTGCAGAAGTTGGCCTCCAGTCCCGCCTGCGGTGCCGAG
Seq A exon
GTGGGTGTAAATCTAGATGTAGGGGCAGGAGGTAGGGGGACACATCAGGCCACTTAGACCCTCTTTAGGCTCACAAGAACTTAAGGTATTCTGCCCTAGAGTTAAGGCCCTATCTGCACATAGCACACACTCACTGTGGCTTGTGCGGTGTCTCAGAGGACCAGTGCTGGCACTGAACGCCCTTGCGCGTCTTGCTGACTGAGCCACGATACTGTTCACCTGAGCCGTGGTAGCATCCTGTGGTGGGCAGGCAAGAGCGGTGGTCAGCCCTGGGTTGATTCCTGCCCAGATTCTGTACCCCCGCTCCAGCCTCACCCTCTGGCACCAGTTCTTCAGTGCAGCGTGGGATCTGGTGGCAGAAGGCCATGCGCAAACCAGGTCGAGATGTGAAGCACCAAGGCGCCTCGGAGCCATCAGGATTCCGGCAGAAATTCTCACGAAGGTCCCTGAGTAGTCACTTCCCTTATCGAGAGTGGGGTCCCACCTAGCCCACCAGCCAACCCGCAGTAGGCTGGAACCTCTGGCTCCGCCCCCAGGTCCCACCTTCGCATACGCTCTGCCTCCACCCACAGGTGCACTCTCCCTGCTCCGGCCTGTCACCTCACTTGCAAGCATATTTCTCTGGCACAAAGCGGTGCTGGTGTGGACTCTGCGCATCCCACCGCTGGCAGGGCACGCCCGCAGAGGTGGTATTGGTTGTGCCTCGATAGTCTTCACCTTTTCCGCGGAAGCAGTTAAGAGCCTTGCCCTTGTTGCGCCGCTGTGACTTGGATCCTTTGACGGTCGGAGGCAGGTTAGGCCCTGACCGAAAACTGGAATTGGTCTCTGGTACTCAGCAGGCTTTGCTCTCTACCCACGCCTAACTTCCCTAGTACCTCTCCCAGTTGAACCGTGCCCGCCAGTTTTTTCCAAGCTCCTTCCTAGACCCTGACCCTGCAGCCTACCGCAACTGGGCAGGTCGCAGAATTCTCGCTCAACATTCGGGTCTGTGGTGTAGCACCAGGGCCGCTCAGATCCGTCCGGATTACGACAATAGTTGTCTTTCAGATCTTTGTCTAGGAACCTGAAAGCAGTAACAAGACTCTGGGACTCAGTCCCAGTAGAGCTGAGCCCCACCCTCAAAATAAGGATTCTGCCTACATACTTTTCAGGCTGGAAAGGGTGCGAGTGGGGGTGCTGCAGGTCCCAGCGTTGACACTCCCGCCCTGACTCTGTAACGTCTACCTCGCCACGGTAATCCTCACCGTTGCACAGAACACAAACAGCTGGAAACAGGGCCAATGCACTTCTAAGTGGGGGCAGGCCTATCACTCCCTCCTTAGGCTTGATTGACCCCAGCCGCTTACCCTCCCTGCAGGTTTTGATGCCACAGCTCTGGAAACGCACACTGCGGTTTGTTGTGTAGCACCAGGGACCTCTGGGATCCCCATCAGGGTTCCTACAGAAGTTCTCTTCCAGGCCATTCTTTGGCGTGGGCGTATACCTGTAGACAAAGATTCTTACTACAGTGCACACTGGGGGAATACTGCTTCAGGCCTAACGGTCTGACCTGAAGTGTCTGGCTCACTTGTGGTCATTGGGGAACCTGCGACTCCAGGCTTGGCAGGGCAGGCCACCAGCTGTCCTGGCCACAGTGCCCCGGTAGCTGACCCCATTGTCCATAATGCAGGTCCGCACATAATCTGGAAGCAATGGAGGAAGGTCAACAGGGCCTGAGGCCTCGTGGCCCCTGTTACTCAGCCTGTTTCCCCTCCTCACCACCACTTGCCTTTCTTCTGGAAGAGATGGCACAGACTCGAGTGGTATAGCTGTGTGTGCAGCGAGTGCTGGGTCCACGGCAGCAGCTGGCAACCATGGCTGCTCATGTTGTAGTGGAAGGCCCTGGAGAAGGGGGGGGGGGTGGCAGACACAAAGTTAACTGGCAACCCAGATTCTCATGCCCTCAGCCATATCTAGGCTACTTAGCCACTCACCGACAGTCCAGAAGGGGCCCACAGCGCCTAGCACACTCCTCAGCATCTGCCACATCCTCCTGCCATGGCCCCGGCACCGCTGTGTGTAACAGGTTCCTTAACTCTGTGCCCCGGAACAGCTGGAAGTCATTCAGTGGTGAGCGCTGCCCTGCGTGGTGAGCATGAGCGCATTAGTACTTTAACACACCCTATCTTTTGTTCATTTAGGGAATCTAATACAAGGTCTTTGGGGCAGGCCTTATGTATATTTTCAAGGGCCCAGCAAGTCCCTTCATGCCCAGTGAGCTGGGGAGGCCCAGATACAGTGATTATTGCCCATCTGCTAGGAGACCTGGCACTGGGCTCTGGTCTACCACATCCACTCCATGAGAATTTGGGTGACAGTGTGTTGGCCTTGTGACACTTGCCCCTTCTCACCCCTCAGATGAGAATGCTTGGACACTTCCTGGGGAAGGCCCCAAGTCTGGCCTCTCACCAGAATAAAGGCATAAGTTACAGTGGTGCATCGGGCTTAGGAGCCCTGCCTTCTGGGTTGGATAGTTTCTCTGGTTGAAAGACTGCCTCTGGGCTACAGTATGCTCTAATGTAGTCCTGATCAGACTGTGTGTATTTGAATTCCCAGGCCTTCTCAGCTCTGCTCAACAGGCCAAGGTCACTGATCCCGGACCCAAAGAAAAGTAAACTCTCAATGAGAATAGCTATGTAGACCAGGGGTGAACTCCCTCGTGAAGGCAGACTGGGATCAGGGTGGGTGACACTCACCAAGAGCCCTTGAACACTGTACCAGAAGCAGCAGAAGTGGGAGCCACCCCATTCTCCTAAGCTGGAGGCTGCACGGTGACCCACCACAGCCCCATCCCGGAAATGGTGAAATCTGTCCCTTCAGGATTGGGTGACTCTGGCTCCACACCCCCTCTCTGAACCTGCCTGGACTTGACTGACACATAGGGTGACAGTTGCTAGGTGGAGCCTAGGTTTGAGGCCCTCGAGTGCTGTCTCATTGCAGCTGGATCCTGAGAGGCCTCTCTGTGTGGTAGGCAGGACTTAGGAGGGTTCTGTGTGGAAACGTTAGGTGTCCCTGAGGCAGAGCCCGTCTACTCTATGCAATCCCCAGACTTGCCAAGATCACTCCACTGTCTTCCTGCCACCATCTATCCCTGAGGTCGCATGCTGTTGCTACACGCGCTCCAGAAGTTGCATGGAGTCCCTGGTGCCTGCTTTACTGTAGAGGTGTGGTACCCATCACAGTAGTCAGACTCTATGTGATTACGTTTACAAAGTGAAAAACTGAAATTTTCAGTTACACGGGTCACATGTCAAGAGTCTAGTGACCACAGTGGCTGCCATCACCACTGACACTTCTATGCCAAAAGACTCTGCTATACAGGAGTTGCCAAGATTTCCCAGACCCCTGGATTATACTTTTCTGGGCCTCAGTTTCTTCTTGTAAAGTGAGGACTGCAATTTCCCCAGTCCCAATGCTGCCTCTCCCTGTTCAAGCTGCCTTATCAGCTGAGTCCCAGCTGTAGGGCAGTCAGCCTACACCCCTAGCAGCACATCCGAGGAGCATCCATCCCATCGCCCCTCAGAAGTGTCAAACCAGGTAAGCTAAGCAACCCTGCCCATTGGATCTGGTGTCAATGACCATCTGGAGGGGGCGTGCGCGGCTGTGACAGGTAGCAAATCTGCTGTCAGAAGTGGTCTTTCAGGCTGCATGTGGGTCAGGCCTCCTCCAGGCAAGGTAGGAGTTAAGACAGGTGGACCTAGGGACCGATTAGAACATAGTCCCTGCTACGGCTGGGCTAGGAAAGGTGGGGGCGAAACAGGTGGACCATCAGGCAAAACGGGTAAACACCTTGGTAGGAGACGGAGGAGGGTTTTCTGCCAGCCTGTTGCGGTCTGTGCATATGCGCGTGCGCGGCTGGAGCAGCGCTCGAGCGGGCACGCGGTTTGGCCCTGGACGGGTGCCGTAGCCGAAAAGCTGGGCGGATGTTGTGAGCCGGTCGCGGAGGCTGAGGCCGGGGGTGAGTGAGAGGCGGCCTGGCTATGAGCCGGGCGGGTTCGGTGACTCCCCTCGAGGCCCCTGGCCGATCCAGTGCGACAGTGCCGCGGCCTGCGGTATAGGAGTCCCAGCGGGAGCTGGCCTGACAGGTCCTATGGACCTTGGGGCCAAGCAGGGGCGACCTGGGGGAGCATGCGCTGCCCTTGACATCCTTGGCCACCCAGTCTTAGTCGGTTCGGTTCTGAGCCTGGATCTCTTAGAAGGGCTGGGCAATAATGGAGTGGCAGGGAGCTCTGGGGCAGGCGCAGGTTCCGCCTCTAAATCCTCTACACCTGACACTCAGAGTGTGTGTCTGGAAGGTTGGCTTCCAGGTCTTACTAACTGTGTCCAATAAGTCCTGCAATTGTTCCAATATAAGAGGGACTGGTTGTGGATGTTCATCGAGGGCCCCCGGAGGGCGGCACAGCGGCAGAATCACCTTCCTGAGCCTGGTATGATGCAGGCAAGGCAAGGGTTTGTGGCGGGAGCCGAGGGCCCGTTTGGGATGTGATAAGAGTAAGCTGCAGAAAAAGAAGTGCTGGCTCAGGCAAGTGACTAAAGGCCAAGCTCTCTGGACAGGCGCTAATAGAACTTTCTGGGCCGGTGGTGGTGATAGCACACCTGTGCCTTCCGGTTTAGTACAGTCATGTGTGATGGCTGAACTCTTGAAACTGAAAGTTCAGTTTTTAACTTTGTAAACTTAACCACTCTTGGCTCCTGACTACCGTGTGGTGCAGCACACCCCTACACTGAGACAGGCATCAGGGAGTTCATGCAGTTTCTGTAGTAGCTGCAGCAACAACATAAAGAGATAGACAAGAGTAGGAAGACCAATAGAATGATCTTGGCTAAGGCGATGATTGCATAGGATAGACGGTTATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCGCGTGCACGCATGCAAGAAAACTAATGAGACTGAAAATAAGAAAATGGAGGAAGCTTGGGCTAAGTATGACATCTCTTACTCTGGGGCCCCAGGGAACATGGCATAAGGTCTTGCCTTTTGAATATGAGCTGGGCTCCATGGTAAATACAGGAGGTTTTTATTCTAGGCCACCTCACTTTGGACGTGTTGATCTGATTTCCCCAGAGCCAAGGCCTCTAGTTATGGTTCAGCAAACATACTTTGCACCAGGTCTCTACTAGCTCCTGTATGGGGCACTGAGACGTCGTGGGACAATAGTGTCCCTGACACCAGTCTAAATCCCACCCAACATCCATGTTTGGAAAGCTGGGAGCCCTTGCTTACCCCTGCCCTGGGTTAGTATGTGTGTGAATATGCATGGTTCAGTCTTACCTGCTCCCAAGCCTTCCTCCTATTGCAG
Seq C2 exon
GACTGAGGTCTGTGTGAGCCTTTGACTAGCCTGGAGTAGACACCTGCATCTGGCTCAGCCTCCAGGACCATTGACTGCCCATGAGTAATGAGGGATGGCGTCCAAGGGGACTGGCATGTCGTTCTCCCGAAAGAGCTATAGGCTGACCTCAGATGCTGAGAAGTCCAGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528:ENSMUST00000160249:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types