HsaINT0141232 @ hg38
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr3:49700227-49700564:+
Coord C1 exon
chr3:49700227-49700352
Coord A exon
chr3:49700353-49700471
Coord C2 exon
chr3:49700472-49700564
Length
119 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTTGGCATCTCTTCCCCCAGGAC
3' ss Score
10.2
Exon sequences
Seq C1 exon
CGCAAGGTGTATCTGGTGGAGGCTGTGCTCATGAGCTTCTTGCTGGGCATCGTGGAGAAGGGCACACCCACACAGGCACAGTCCGTGGTGCACCAGGTCCTGGACCTCTTGTGGCTCTTCATGGAG
Seq A exon
GTGAGGCTCCTGACCTCAGGCCTCAGGCCTGGCTGTCAGTCTTCACTGGGGTCGGGAAGATACGGGGAGAATCTTGGAAAAGGCCCCAGTCATGGCTGCCTTGGCATCTCTTCCCCCAG
Seq C2 exon
GACTACGAGGTACAAGATTGCCTCAAGCAGTTGATGATGTCTCTGCTTCGGCTGTACCGATTCTCACCCATTGTCCCAGACCTGGGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068:ENST00000327697:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGTGTATCTGGTGGAG
R:
CAGGTCTGGGACAATGGGTGA
Band lengths:
210-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development