GgaINT0022703 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2187973-2188791:+
Coord C1 exon
chr12:2187973-2188098
Coord A exon
chr12:2188099-2188698
Coord C2 exon
chr12:2188699-2188791
Length
600 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTGTTTCTTGTTTTCTCAGGAA
3' ss Score
9
Exon sequences
Seq C1 exon
TGCAAGGTGTACCTGGTGGAAGATGTGCTCATGACCTTCCTGTTGAGCATCCTGGAGCGAGGAGGGGCAGTGGATGCCCATCCGCTTATTCAGCAGCTGCTGGATCTCATGTGGCTTCTCATGGAG
Seq A exon
GTGAGTTGCTGGAGTGCTGGGAGGTGCTGAGAGTAGGAGCATCCACTGGAACACGCTGGTAGTGATCAACTTCTTTGCCTTCCTGGTGACGAGATTCCATTTTGTGGTAGACGTTCCTCTTCCTGAGATTATCTTGCTGACCAAATGAAACCAAATGTGCTGGTGGGGCTGCCAAATTGTAGAAGGGACAGCTTTTGTCCCACTGGTTGGCTGTCCCTTGGACTTGACAAGGCAGTTCCTCCACCATCATGTTTAACAAGAGTAGCTTGTCTTTCCCTTGTGAATTGATTCTGCCAGTGCTGACTGGAGTAGGTTTTTGGGCTGTGAGGATGGGTGTCTCAGCCCAGCCAAATAGGACCTGGGACTTTGGCTTGTCCACTGGGTTGGTTTTACTCACACAGAAGCTTATTCCCCTGTAGCAAAGTGATAGCATCAACCACTGCTCACACTCTCCTGTTGAATAAGGTGAGCAAATGCTGTGGGTTCAGAGTGCATGTGTTTTCAATACAGAAGTACATGCTGCATCCTTCCAAAGCTGCACTGTGGGAACTATAGCTGTGTCTGACACCATCCTGTTGCTGTTGTTTCTTGTTTTCTCAG
Seq C2 exon
GAATATGAAGTGCACGAGTGCCTCAAGCAGCTACTGATGTCACTGCTGCGGGCCTACAGGTTCTCTCCTATCATCCCAGACCTAGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCTGGTGGAAGATGTGC
R:
TCCTAGGTCTGGGATGATAGGAGA
Band lengths:
206-806
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]