RnoINT0127621 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116846150-116846485:-
Coord C1 exon
chr8:116846360-116846485
Coord A exon
chr8:116846243-116846359
Coord C2 exon
chr8:116846150-116846242
Length
117 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GCCCTAGGGTCTCTTCCCAGGAC
3' ss Score
6.89
Exon sequences
Seq C1 exon
CGCAAGGTGTACCTAGTGGAGGCTGTGCTCATGAGCTTCCTGCTGGGCATTGTGGAGAAGGGCACCCCTGAGCAGGCCCAGTCCGTGGTACACCAGATCTTGGACCTCTTGTGGCTCTTCATGGAG
Seq A exon
GTAAGATTTCTGACTCCTGGCTCAGGCCAGGCTATCAGACTCCATCTTGGATAAGGAAGGTATGGGAAGGGTCTTTGAAAAGGCCTCCGTCATGGCTGCCCTAGGGTCTCTTCCCAG
Seq C2 exon
GACTATGAAGTTCAGGATTGCCTCAAGCAGTTGATGATGTCTCTGCTACGTCTCTACCGATTCTCGCCCATTGTTCCGGACCTGGGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGAGGCTGTGCTCATGA
R:
GTAGACCCAGGTCCGGAACAA
Band lengths:
204-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]