HsaINT0141261 @ hg38
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr3:49697363-49697939:+
Coord C1 exon
chr3:49697363-49697457
Coord A exon
chr3:49697458-49697884
Coord C2 exon
chr3:49697885-49697939
Length
427 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CACCCCTCTTCTTCACCCAGGTG
3' ss Score
9.49
Exon sequences
Seq C1 exon
GACAGGTTGAAGGGCGGCTTGGCCCATCCACTGTGGTCCTGGACCACACAGGCGGCTTTGAGGGGCTTCTCCTGGTGGATGATGACCTGCTGGGG
Seq A exon
GTGAGTGAGGGTGAGGTGTGGAGACCCAGGTCCAGCCCCTTCTGACATAGCCCCAGGCTCCTCCTGATGTGGCCCTAGTCTCTCTACTCATCTGATGGGGCTGCAGCCAAAACTTGTCCTGACGTGGCCCCAGACCATTGTGTTCTCAGTCCTCAAACTCTCCCACTAAAGCCCTGAAACAGTCTTGATGTGGACTCAGCCCCCAGCCCTTCCCAGCACAGCCCTGAGTCCCTCTCTCATCCTGCCTTGGCCCAGGATCCTTCCTGATACAAGCCTACCCGCTCCCACCGTCCTCAGGCACAGTGCAGTGTTGGCCGCCACAGGCAAATACCACCAGGGCTGGCTCAGTTGGGGATGGGGTCTTTTTCCCTTGGGGAGATGCTCTGTGTGCCTGGGAGCTAGCCCACCACCCCTCTTCTTCACCCAG
Seq C2 exon
GTGATTGGACACAGCAACTTTGGCACCATCCGCTCTACCACATGCGTGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068:ENST00000327697:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062223=SPRY=PU(0.8=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development