BtaINT0125546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51074485-51074971:-
Coord C1 exon
chr22:51074877-51074971
Coord A exon
chr22:51074540-51074876
Coord C2 exon
chr22:51074485-51074539
Length
337 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
ACCCCCTGCTCCCCACCCAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
AACAGGTTGAGGGGCGGCTTGGCCCGTCCACTGTGGTCCTCGACCACACAGGTGGCTTTGAAGGGCTGCTTCTAGTGGATGATGACCTCTTGGGG
Seq A exon
GTGAGCAAGGGCAAGGCCTGGGGCCCCATATCCAAGCCCCTCCTGATGTGGCCCATTGAGTCCCCATCCCCCAAACCTTCCTGACAGTAGCCCCGAAACGCTCTTGGTGTGACCCCAACCCCGAGGTCTTCCCAACACAGCCCCCTCCCATCACGCTTCCAGCCCAGGATCCCTCCTGACCCGGGCCTGGGCCTTTCCGCCCTGTTCCGGCACGGTTCAGCATTGGCCACGACAGGTGTCGCCACTGAGGCGAGCCGAGTTGGCATGGGACTGTGCTCCCTTGGGGAGGCCCCCGTGTGCCCAGGAGGAGGCTCACCACCCCCTGCTCCCCACCCAG
Seq C2 exon
GTGATTGGACACAGCAACTTTGGGACGATCCGCTCCACCACGTGTGTGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062223=SPRY=PU(0.8=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]