RnoINT0127650 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116848645-116849156:-
Coord C1 exon
chr8:116849062-116849156
Coord A exon
chr8:116848700-116849061
Coord C2 exon
chr8:116848645-116848699
Length
362 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TCACGTTTTTCTCCACCCAGGTG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GACAAGTTGAAGGCCGACTTGGCCCATCTACTGTGGTCCTAGACCACACAGGAGGCTTTGAGGGGCTTCTCCTTGTGGACGATGACCTCCTGGGG
Seq A exon
GTGAGTGGAGATGTGTTGTGGGCCCCTAGTGCAGCTTTCAGATCAGATATGGCCCCATCATTATATTTATCCTGATGGGGTTAGCCATACACCCATCTTGACACTGCTCCACTCCATGGTATCAGCCCTTAACACCCCTGACATAATCCTGAAACCATGGTACAGTCACTACCTCAAGGCCTTTTAGCAAAGTCCTGGGTCCCATCATGCCTGTCCCAGAAGCTCTAGGCATGGATATAGTTTGTCCTGCCTTAACCAGACACAGTGCAGTGTTGGCCATGACAGACTCGTGCCACCAATGCTAACTCAGCCAGGGACAGCATATGTGCCTGCAGAGAAATGTCACGTTTTTCTCCACCCAG
Seq C2 exon
GTGATTGGACACAGCAACTTTGGCACTATCCGTTCTTCCACATGTGTGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062223=SPRY=PU(0.8=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]