HsaINT0141262 @ hg38
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr3:49697885-49698137:+
Coord C1 exon
chr3:49697885-49697939
Coord A exon
chr3:49697940-49698051
Coord C2 exon
chr3:49698052-49698137
Length
112 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTAACTCAGCTCTTTCCAGGGA
3' ss Score
1.73
Exon sequences
Seq C1 exon
GTGATTGGACACAGCAACTTTGGCACCATCCGCTCTACCACATGCGTGTACAAAG
Seq A exon
GTGAGACCTTACCCTGCTGTGGCCTAGGTAGTGAGGAGAAAGTTTAAGGGCCCAGGCATGAGGCAAGAGGCAGTCTTTGTCCACCTCGTGGCCCTAACTCAGCTCTTTCCAG
Seq C2 exon
GGAAATGGCTCTACGAGGTCCTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGCACCATCAGCTGCCGCTTCAACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068:ENST00000327697:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PU(0.8=5.3)
A:
NA
C2:
PF0062223=SPRY=PU(13.1=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGACACAGCAACTTTGGC
R:
CTCCTGGTTGAAGCGGCAG
Band lengths:
138-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development