RnoINT0127651 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116848464-116848699:-
Coord C1 exon
chr8:116848645-116848699
Coord A exon
chr8:116848550-116848644
Coord C2 exon
chr8:116848464-116848549
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTAACACTGCTCTCCGCAGGGA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTGATTGGACACAGCAACTTTGGCACTATCCGTTCTTCCACATGTGTGTACAAAG
Seq A exon
GTGAGCTAATGCCTCTGTGACTCAGAGAGTTAGGAAGAGACTGAGGCAAGCAGCAGCCTTCCTTCACCTGCTGGGTCTAACACTGCTCTCCGCAG
Seq C2 exon
GGAAATGGGTCTACGAGGTGCTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGTACCATCAACTGCCGCTTTAATCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PU(0.8=5.3)
A:
NA
C2:
PF0062223=SPRY=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACACAGCAACTTTGGCA
R:
TCCTGATTAAAGCGGCAGTTGA
Band lengths:
136-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]