GgaINT0022696 @ galGal4
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr12:2347059-2347522:+
Coord C1 exon
chr12:2347059-2347113
Coord A exon
chr12:2347114-2347436
Coord C2 exon
chr12:2347437-2347522
Length
323 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGGCATCTCTTGTTTTTCAGGGA
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTGATTGGCCACAGTAACTTTGGCTCTATCAGGGCCACAACGTGCGTGTACAAAG
Seq A exon
GTAAGAAGATAAGTGAGTGATGCTTTGATTAAGATCCCAGGAAGAACGCATGGAGAGTTACACAACTGGCGAGCACAGGAAATCTTGAATGTGTTGCAGTTCCAGAGCTCTGTCTTCCCAAATTCATCCATTGGCTTTCTAGGAAGTCAGGAGGGTGGAGAATTGTGTGGTGCCCAAGTGAAGACTTGGGATGGGAGTCCTGGGGATGTTGCAAATACCCTTTATGTGCCAGGTTATTTTCTATGGGAACTGTATGACATTTTAGTTCTCTAACGATGAGTCAAGTGGCATGGATTTACTGTGTGGCATCTCTTGTTTTTCAG
Seq C2 exon
GGAAATGGATTTATGAGGTGCTTATCTCCTCCCAGGGACTCATGCAGATCGGCTGGTGTACTCTCAACTGCAGATTTAATCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PU(0.8=5.3)
A:
NA
C2:
PF0062223=SPRY=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]