HsaINT0143329 @ hg19
Intron Retention
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:10449]
Coordinates
chr6:7229230-7247454:+
Coord C1 exon
chr6:7229230-7232140
Coord A exon
chr6:7232141-7246656
Coord C2 exon
chr6:7246657-7247454
Length
14516 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CCGCTGTGCTTGCCCCACAGACA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GCCTGGTGCGAAACAAACCTGCGGAGGTGCATCAGCGAGCAACACCGTTTTGTCTGCGACACCTGTGACAAGGCGTTCCCCATGCTCTGCTCACTGGCTCTGCACAAGCAGACCCATGTGGCGGCAGACCAGGGTCAAGAAAAGCCGCAGGCCACGCCCCTGCCTGGTGACGCCCTGGACCAGAAGGGCTTCCTGGCCTTGCTTGGCCTGCAGCACACCAAAGACGTCAGGCCTGCCCCCGCCGAGGAGCCCCTGCCGGATGACAACCAGGCAATTCAGCTCCAGACACTCAAGTGTCAGCTACCTCAGGACCCCGGCTGCACCAACCTGCTGAGCCTGTCACCTTTCGAAGCTGCTTCCCTAGGCGGTTCTCTCACAGTTCTCCCCGCGACCAAGGACAGCATAAAGCACCTGTCCCTGCAGCCCTTCCAGAAGGGCTTCATCATCCAGCCTGACAGCAGCATTGTGGTCAAGCCCATCTCTGGCGAGTCGGCCATCGAGCTGGCAGACATCCAGCAAATTCTGAAGATGGCAGCCTCGGCTCCCCCTCAGATCAGTCTTCCGCCCTTCTCCAAGGCCCCTGCCGCCCCACTGCAGGCGATCTTCAAGCACATGCCCCCTCTGAAGCCAAAGCCCCTGGTCACACCACGGACGGTGGTGGCCACCTCCACGCCCCCGCCTCTCATCAACGCCCAGCAGGCTTCCCCGGGCTGTATCAGCCCCAGCCTGCCGCCACCGCCCCTGAAGCTCCTCAAAGGCTCAGTGGAGGCGGCCTCCAACGCCCACCTGCTGCAGTCCAAGTCCGGGACCCAGCCCCACGCGGCCACGCGGCTCTCCCTGCAGCAGCCGCGGGCGGAGCTGCCGGGCCAGCCTGAGATGAAGACGCAGCTGGAGCAGGACAGCATCATCGAGGCCCTGCTGCCGCTGAGCATGGAGGCCAAGATCAAGCAGGAGATCACAGAGGGGGAACTCAAGGCCTTCATGACAGCGCCCGGCGGCAAGAAGACGCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTCTGCAACCAGGTGTTTGCCTTCTCGGGGGTCTTGCGTGCCCACGTGCGCTCCCACCTGGGCATCTCGCCATACCAGTGCAACATCTGCGACTACATCGCCGCCGACAAGGCCGCGCTCATCCGCCACCTGCGCACGCACAGTGGGGAGCGGCCCTACATTTGCAAGATCTGCCACTACCCCTTCACTGTCAAAGCCAACTGCGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCACCCGCAAGGATATCGAGAAGAACATCGAGTATGTGAGTAGCAGCGCGGCCGAGCTGGTGGACGCCTTCTGCGCCCCGGACACCGTGTGCCGGCTGTGCGGCGAGGACCTCAAGCACTATCGTGCCCTGCGCATCCACATGCGCACGCACTGCGGCCGCGGCCTGGGCGGGGGCCACAAGGGCCGCAAGCCCTTCGAGTGCAAGGAGTGCAGCGCCGCGTTCGCGGCCAAGCGCAACTGCATCCACCACATCCTCAAGCAGCACCTGCACGTGCCCGAGCAGGACATCGAGAGCTACGTGCTGGCCGCCGACGGCCTGGGCCCCGCAGAGGCGCCGGCCGCTGAGGCGTCGGGGCGCGGGGAGGACAGTGGCTGCGCTGCCCTTGGTGACTGCAAGCCCCTCACTGCCTTCCTGGAACCCCAGAACGGCTTTCTTCACAGGGGCCCCACCCAGCCTCCACCTCCCCATGTCTCGATCAAGTTGGAGCCCGCCAGTAGCTTTGCGGTGGACTTCAATGAGCCCCTGGACTTCTCGCAGAAGGGCCTGGCCCTGGTCCAAGTGAAGCAGGAAAACATCTCCTTTCTGAGCCCTTCTTCCCTGGTCCCCTATGACTGCTCCATGGAGCCCATCGACCTGTCCATCCCCAAGAACTTCAGGAAAGGGGACAAGGATTTGGCCACTCCCAGCGAAGCCAAGAAGCCTGAGGAGGAGGCGGGGAGCAGCGAGCAGCCCTCTCCCTGCCCAGCACCCGGCCCTTCTCTTCCTGTAACTTTGGGGCCCAGCGGAATCCTGGAAAGCCCCATGGCCCCTGCTCCGGCGGCCACCCCGGAACCCCCAGCACAGCCCCTGCAGGGCCCTGTTCAGCTGGCGGTCCCAATCTACTCCTCAGCCCTGGTCAGCAGCCCTCCACTCGTGGGCAGCTCAGCCCTCCTGAGTGGCACAGCCTTGCTGCGTCCACTGCGGCCCAAGCCCCCGCTGCTTTTGCCAAAGCCCCCCGTGACAGAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTCATCTGTATCCTCGGCCCCCACCCTGCTGAAAACCAAGGTGGCGGACCCAGGGCCCGCAAGCACTGGCAGTAACACCACGGCTTCAGACAGCTTAGGAGGTTCTGTCCCCAAAGCCGCCACCACCGCCACCCCCGCTGCCACCACCAGCCCAAAAGAGTCTAGTGAGCCTCCCGCTCCAGCCAGCAGCCCAGAGGCTGCCTCTCCCACCGAGCAGGGCCCAGCGGGCACGTCGAAGAAGAGGGGCCGGAAAAGGGGGATGAGGAGCCGACCCCGCGCCAACAGCGGCGGGGTGGACCTGGACTCCAGCGGGGAGTTTGCCAGCATCGAGAAGATGCTGGCCACCACAGACACCAACAAGTTCAGTCCGTTTCTGCAGACAGCGGAGGACAACACTCAGGATGAGGTGGCCGGAGCCCCTGCCGACCACCATGGGCCCAGTGATGAAGAGCAGGGCAGTCCCCCAGAAGACAAGCTGCTGAGGGCCAAGCGGAACTCGTACACCAACTGCCTGCAGAAGATCACCTGTCCCCACTGTCCCCGGGTTTTCCCTTGGGCCAGCTCCCTACAGAGGCACATGCTCACACACACTG
Seq A exon
GTAAGAGGGCCACCGGGCTCCCAGGCAGTGAGTCCTACTTCCTGGTAGGGGGAGCCACGAGTGGGGGTCAAAAGCGAGACCCATCTCCCACAGTTCCAGTTATTCCTAGCTTGGCTTCTTCCCCGGTCTCCGAAGCCCCGAGCTTGTCTGGTGGTGCTGTATTTCCTATGTGCTCTCAGTACCCACATGGCCTTTGTGCAGGGGCCGAGCCCTCCAAGGGCAGCATTCTACTAAGTGTTCATCCGGGGCGTTTTGAGGTGAAAGTGGTCACAGGCCCTCAGATCACTCATGGCGTCGCCTCATCCCTTCCGGAGGTGGTAGCCAGATTATCTGCTGGGTTAAACAGGGAGGCGGCTCCACAGACGTGAGACTTTGTATTAAGGTATTGGGGCATAATGAGCTCGGTGCTTTGACATTCCATTCCAGTGTCCTCAATGCAGCTTTTTAAATTTTGACAATTTTGTGAAGTTTTTTTGGATGCCATGTCTTCTTAAAGAGAAATATGACAAATTGTGAGGTTGGCTGTTTTCTTTCAGTTCACTAAGGCAGTCACATCTTCCCCTGTTGATTGTGAAAATCAGCAATGAGTGGTGGTAGAATGTTTTAAAATTTCTGTTTATACTACAATTGTAAGCCTTTCTGAGAAACTTCTCTCAGAAGGGCCTGGCGCTGGTCCAGGTGAAGCAGGAAAACAACTCCTTCCTGAGCCCTTCTTCCTTAGCCCCCTACGACTGCTCCATGGAGCCCATCAACCTGTCCATCCCCAAGAACTCACACCCAAGTGTGAAAAAATTCTAAGTAACAAACTTAAATTGTCAAAGTGATACCCCAAAAGTATCTTCCTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTAAATAAAAGAGTCTCACTATATTGCTCTCAAACTTCTGGGCTCAAGCAGTTTTCTTGCCTCTTCCTCCCAAAGTGCTGGGATCACAGGCATGAGCCCCCACACCTGGCCCCAAAAGTATTTTTCTTTTTTTGAGACGGAGTCTCGCTCTGTTACCCAGGCTGGAGTGGAGTAGTATGATCTCAGCTCACTGCAACCTCTGCCTCCCTGGTTCAAGCAATTCTCCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCATGCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTTGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGTCACTGCACCTGGCCTGCCCAAAAATATTTTTCAAATGTTAGTTTCTAGAAGCTGATTTTTAAAGAGAAGTTTAGGATAGGAATATACTTTAAATAATTTTGTTATCAGGTGCTTCTAGTATATAAATGGCCATACAACTCTCATCTGAATTATAATTTTCTAAATTTTCTCAGTGAACAGTCTCAGTATTCAGTGATTTGTGTTATTGAACTAAGCGCAAATTAGTGAGATCCTATCTTTTTGGAGTTTACAACCAAAATATTAATAAATAGATAGGGCCTAAAACCAAATGGTACTGGATTGGTGAATAAAATACAGAACACCAGTTAAACTTGAATTTCAGATAGACAACAAATAATTTTTAGTATAAGTATTTTTATGTAGTTCTTGGGATTTACTAAAAAATTATTTGTTTATCCAAAATTCAAATTTAGCTCTGGGCATCCTGGGTTTTTTTTGTGGGTTTTTCTTTTTGCGCTAAATATGGTAACCCAAGGTAGTCAGGAGGTTTATGACAGGATGTTGAGGGTGGGTTGTGGGAATTGGTGTGAGCTGTGCTCTGTGTCCAGGTGGAAATGCATTCACAAAGCTTTGGAGAAGCTCGTGGAAGGATGTTTCTCCTAGATGAGGTGGAACAGCAGGAGGGAGGTCATGGAGCCACCGCTGGATACCTGAACAGTGTGCAGAATGGAGCCTGGGGAGGGAGAGGAATCTGGGAGCCAGAGGGGAGTTGTGGCTGGGAGCGATAGGACTCTCAGTGGCTGCACTGGTCACCAGAGCTTGCCACACAGACACGGCATTTCCTTCTGCTGTGGTGGGTCCTTGAATCCAGGGATTGAGGAGTAGCAAGTCAGGAGTGCCTATCCAGGGAGGACTCAAGGAGAACCAGGATTTCTAGATTTGTAAAGTATGTACTGCCCTTTCATACCACTGTCTCCCTGTTAAAATAGTTTAAGCCTGACAAGTAAAGCAACCATTCTAATGATGACAGCAGTTCAGGGAAGAAAATGCATCTTCAAGAGAAGGTGCCCCTTATAGCAATGTCTTTTGCTACCCTTTTTTGGGTGCCACCTGTTTATCGCCTACTGAGAGTTTATGGAGAAGTGAGTCTTTCTGTTACCACTTTTCAGAAAGCAGATGGTCTGGATCTGATGATTGGCTTGGCTCGCCCCCTTCCTCGGTGCTCCCACCTCCCCCTGCTGTCACCCAACCTCCCCATCTTCCTCTTCTAGTATTTTCTTTTTTAAGAGTTGTGCCCATGTCTTTGCAGGTGCCTGATATGTGTTCCCATTTGTGAATCCAGTCATGATTGCCTGGCTTTTGAATGCCAAAATGTCAGTGTTGGTTTAAAATTTAGTAGCATCTGAAACTGAGCAAGAAAGCAGGAGGTTTGTTTAAGTTAGGATGGGGTAGATATAAATATAAACATTCTGCCTCTTGTCCCTTAAAAGTTATTGATAACCTTGATAGATGTGTCTGCTTTGGCGCAGTCCCTGTATCCTACCATAATATGTTCTTGGTAGAGCTAGTCTTCATGACAATCCTGTGAGGGTGATGTCATCCATGTGTTGCCACAAGGAAATTGAGGTTTACTTTTAAGGAGCTAAGTAACTTGCCTACAGCCATATGGGGAATAAGAGATGGAGCTACTGTTCCAAGCCAGGGTCCGGTTCTGTGCAACTGCCCACTGGTCAGGGTGTGTGTGCCCAGTGTGTCCTCTGTGTGAAGGCAGAAGGCGGGCAGAGTGCACCTTCCATGTCTCCCTGTGTTCCCACATGTCCACATTGCAGAAGGTTTGGAAGTAGTTTGAGATAAGGGGGGACACCACTGTGGATCAGAATGTTATTAGCTAATTTCAGACTTAATGACTACAGAATCGTGTTAGCCACATGCATAGACACTGTATGAAGGTTGGTGCCCATTGAGCTCCATTAATTTCCTTTGCTGGGCTTCACTCTCAGCTTCCAGGGATGTTCAGCATCACCACTGCTAAATCATGTTATATGGAGCACTTGGCTACATCCAGTGTCGTGTTAGAGCATTTTCCATTCACGGAGCATTAGAGCTGGAAGGAGCCTGGGAAGTCACCTGATGGCCCCTCAGCCCACAGACCTGATCTTTCTCCTGGTAGGCAGCTCTGCTGTCACTCAGAACCACATGGATCCTTGGCTCCCTAGGCTTCTGTGAGGCGCTGTCTCCAAAACTTTGAAAAAAGTCTTGAGTGTACACATGTTAAACATTGACTCTGCAGCCACCCTGCAAACAAAGGTGTTATTCGGAGAAGATGTTCTGTGGGGTATTTTTGTTTTTTCTAGTTTTTTGCTTTTGTACAGACAAGGTCTCACCATGTTACCCAGGCTGTTCTCGAACTCCTCAGCTTTGCAAAGTATTGGGATTTTAGGCGTGAGCCACGGTGCCTGGCCGTTTTGTGTTTTTGAGTACAGTGTTAAAATCTAGCTGAGTTCCAGCCAGAAGCATTGAGCAGCATCTGGTTTTGGACTGCATTTAAACAAACTGTCTACACCTTGAATGCTGGCCTCCTCCTACCCCCTCAGCAGATTACTGTACTGTCTCTACTTTGTCTCAAAACACGTGTTCTCCAGTCCTCCCAGTCCTCAAAGGGGCAGCAAGAAGCAGATCCGGTGTTCAGTGTCCAACGAGGGGTATACCTGCTGGCTGCTGGCAAGGAGCATGTGGCCTCAGCCTTTTCTTGCTCCCGGCTCAGGTTCCAGGAACTGTGTTTGATGAGGAAGCTGGCAGGGCTGTCATTTTTCATACCCCCTGGCACAGTCTCCACACACACCTGCCTTTCCTCCTTCCTTCCACTCCTCTCCAGCTCTCTCCCAGACCATACTTTCCTGCTGATGAGGACAGTTCCTGGTTCCTTACCTTTCTCTACCTAAACGCGCCACTCCATAGGAGACAAGAGTGCACTGTTCCTGCCTTTACCCCTCGGGAGCATCTCGTGTGTTTTTAGGCCACAGGTGGAGGAGAGGGTGCCAGGAAACACAGCCAGTCTGTTCTAGCCTCTGTCCTCATTTTCTTCCCCCTTCCCTTTGCTCCAGTTCCTTGTCCCACAGTGATGGGCTTGGGACTATGGGGTGTCCATTCCGGGCTTCCCTGGCTTGCTTACTTTCTCATGGGTGCTTTGAGCGCCTTTTTTGAGCCGGCTCAGGCTTTCCCCCCACACCCTTTCCTCCCTGCTTCTATCTGGCAGTGAGGGTCAGAGCTTCGGTCAGTGAGTCATCCAAACCTGGGTGTGGAAAGCACCTGGGACACCACTTGTATTTGGCTCCTTTTAGCTTTCTTAAAAGACAGCTTTGGCCGTTTGTACCCAGTCCTGTGTACACTTCTGCCAAATACAGAGAGAAAATACCAAAAGAAAGAAACCTGCCTGCAGGGGTGGAGGAGCAATGGAGAGAAGGCTGGGCTGCTCAGGCTGTCATCTTGTTACAAAAAGAAAAGCAACTGCAAGGTTTTCTATGCTAGTTAGACCCCACCTTTCTAACCCTGATTGTCTTTGAAAAATGAACAGAAATGTTTTCAGTTCTGTTTTTTTTTTTTTTTATCTTGGAGGCCAAGGCCCCAATCTCCTCATCAAACTATTCTCACTGTTCACTCTTCTCTTGCCCCAATGTCCTTCTTCGTTTCTTGACTGTTCTGGGAGAGTAAACACTGGCTAATTTTTTTTGTTTGTTTTTGGAGGTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAAGCTCTCACCCTGTCACCCAAGCTAGAGTGCCTGTGTGCACCCTGGCTAGAGTACAGTGGCATGATCACAGCTCACTGCAGCCTTGAACTCCTGGCTGAGTTCAAGTGATCCTCCTGCCTCAGCTTCCCAAGTAGCTGGGACTACAAGTGCACATCACCATGCCTGGCTAATTTTTTTATTTTTTGAGACAAATTCTTGCTCTGTAGCTCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACCACAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGTGCGCGCCACTGCACCCAACTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCACATTGGCCAGGCTGGTCTTGAACTCCCGATCTCAGGTAATCCACCAGCCTCGACCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCTCCGTGCCGGCCTTTTTTTTTTATTATTATTTGTTATAGAGACAAGGTCTCACTGTGTTGCCCAAGTTGGTCTTAAACTCCTGGGCTCAAGCGATCCACCTCCGTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTCTGCCCAGCTGGCTGATGGTTTAAGCGCTCGCGTTGGGGCTTGCAGAATGCTGTAGGTCCTGAGTGCGCAGGTAACTCACTGTGGTTACAGGTGCTTTTACAAATCCCCTTCTAAAGCAGTTATTCGTGGCAGCTACCAAATAAATAGAATCATTTGCTACTTTCTATATAGATGGCTGGCCAACAAGTGTTTTTGAAACCTGCGTTATTATAAAATACTAAACGGGCCCGTTTTCCTGCATCCCTGCAATCCAGAGAGCCCACCACTATGTAAAAATGTCAGACTTACGCAGTGAAATGTGAGCTTCTAATGACTCATGTGAGTTGTTATGTCACTTTGGGAGCCTTTGTAGTTTGATGCAATACTTTCACATCATGGATTGTTTTCTGAATTTAGCATTAATAGGGACCTTCTCATGGGGACGTCAGCCTGGCAGTCCTAACCAACTGTAAAGGTGACGCACTTACCAGTGTGAAAATTACAGAGTAAACCATGTGACAGGGGGGAGCGAGAAGCCGATTGTTTTCTTTGAAATCAAGAATCCTATCATAGTAGCTTCTTACTTGTTTTCCTCTTGGCCCAGTTCTTTTCTCAATCTGGCCAGACTCAGAGAAGCAGCAGTGTTACCTTTTGACAATAAAATGTTAAAAGTACTTTATTTTTACTTGAAATTATTAAATACTGTGTTCAATTTTAAATGAAAAACAATAAGTAATTTTTTTCATTTTATTTTATTTTTGAGACAGAGTCTGTCTGTCGCCCAGGCTAGAGTGCAGTGGCACAATCTCTGCTCACTGCCACCTCCGCCTCCCAGGCTCAAGCAATCCTCCCACCTCAGCCTCCCCAGTAGCTGGGATTAAGGTGTGCACCACCATGCCTAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTATTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCTGCTCACCTTGGCCTCCCACAGTGTTGGGATTACAGGCGTGAGCCACCGCACATGACCACAAGAAGTAATTTGGAAGACGCACCATGAACACTGACATACTGTACAACTAGTCACACTTTTTTTTTTTAATGTGGATGTTTTAAAAATAAATTTTGCAGAAAACACCTGCAGAATGATATGAGGAGACCCTGAAAACAGTCAGTGGGGTTCTCCACTTTTGTTCAGGTTGCCTTGTGGAGCTACTCAGAAGCACACAGGCCGGATTTCTGGGTGTCTGATTCTGCCCTTTCCGGGTTTCTAATTCTGTTGTCTTTGATTGTTGCATCTTTATTCTTAAAAGCGCCTGAGGAGATTTGTAAGCATCATCTTAAAGGGTCTTTTAGCTCAGGAGGGAATCAATGTCCCCTGTCTCTGATTATTACTCCTGATGTGAAATTGTGGCCATGCTGTCATGGGGGCGGTGCCAGGTCCACACCTTCAGGCTCTGTATGAATGGCGCCCCCTGGAGTCGTGTGACACAGCCAGTGCCGGTTAAGGCTAGTCCCTCCTTCCCCTGGGAAAACACGTGGCCCCTCTGGCTGGTCCCCAGGTGCCAGGCCCTTGCTGTGCATTCACAGGGGAGTGCGTGGCCTTGGGCACCTGCACTAGTTCAGGCTTCTATCGACATTAATCTAACGCCAGAGGCCCCTGTGATCTGTGTTTCCAGGGAGCTGTGTTTAATTGTGGCAATCCTAGGGTTATGAGACAAAAGTACTGGGCCCCAGCTCTGAAGTCATGTTGGTTAACACACAAAACCTTTTACCCTGTAACATTAGCAACTGGGACCTTGGACTCCAGCAACTTGGGGGAAAGGGAGGAATTCAGTGATACACAAGTGATGCACCACCAACTTCCGCCTCCTGAAGGCCCCTGATCCCCTCCCTCCTCCTCTCTTTTCCTCTCCACCTCCTTTTTCCCTTGTGCTTTCTTTCTCCCTCACATGCATCCGCACAAACCCAGGACAAGTTGTAGAGGAGCTTCTATTGCATTTTGAAACATGATGTTTACAGCACAAAAGGAATCCAAGTAAAAGGAGAGGGTAGGCAGACCAAAGCAGGAGGGGACTGTGCCTCTCTCAGTGGCTCACCCATCTGTGCGTTTGGGATGGGTCTAGGGGCGAGGCAGGGCTGCCAAAATGTCCTCTTCACATGCACATCTGTTGAGTGGAGCACATGATCAAATGCAGACATAGTTACGTATTGGTCACTCATTTGCAACCAAGCTTGGAGCAGGGGGAACAAAGAACCTTTAATGAGAAGATCTCCTGACTGTTGCCACCTAGGACCACAGTGAACTTGAACAGAGGTCACTGCAGGATGTCTCGGCAAGTCAGACAGGAGTTGTCCTGGGAAGTCAGAACTCACTGCTCCCGTTCCCCTGTGGGAGGGACACAGCCACCAAGGCCAGGAAGGGGGACTGGCCACCCTGGCTGGGGGCTGTCCCTGACTTCTTCTCTTCATGGGCCCCCAAAGATACCCAGGGGTTCCCCATTGGATTTCCTAGTGTCCATATTACGGTGTCCTTGCCACACTAGAACTCGTTAGAGGGCGTCTTTCTCTTTGTGATAGAATATAGGTGTTTTCTTGCTGTGCTCTAAAATCTCTTCATTCGCTTTTTTTTGTTGTCGTTAATATTTTAATTGTAATACCGTTGTTTTACTTTAAATGTATATTTTTCAGTTTCATTTATTTTAGTATTTTGAGGACAAAAATTCATATTCCATTCAACTTAGGAAAAGGGAGAATGATCATTTTAGTCATTGATGGTTTTTTTTTTTCTAATGTGTTTTGTTAATTTTCTTGAAGGGATGGAGGAGGGGGGAACAACTGCCAATGATCCCAGGAGAATAAACAAAAGCGACTTTTCTATTTCATTGCAGTAGAAAGCCAGATAAATATATATTTTTTTTCCTGCTTCAGGTCAGAAACCCTTCCCTTGTCAAAAATGCGATGCCTTCTTTTCTACCAAATCTAACTGTGAACGCCACCAGTTGCGCAAACACGGAGTTACCACCTGTTCCCTGAGAAGAAACGGGCTTATCCCCCAGTCAAAAGAGAGTGATGTTGGATCCCATGATAGCACAGGTAGTGCCGCCAGGTGAACAAGAACCCAGGAAGAGGGAGAGAGAGGAGTTCGGTTAAGAATTGTAGCAAACTCCAGTCCGAGCTGTGGAGGGGCTGCTTGTTCACTTCTCTGTAGGATTCAGAGCCCACAGCCTGTTAATAGAAAGGCAGGCCCTGCTGATGATTGGGAGGGAGTATAACTCCTGGGTCAGATCGCCTAGACAGACAGCAGAAAACAGTGACAGTGCCCCTCGGTGACTCTCGGGGCTGCTAGGGAAGATCTGTCACCCTCTTGGCAGAAGAGGCCTTTGTTCCCGATGTTGGGAGGTGGGATGTATGGGAAGGCTTACAACTTTAGCCCTGGGTATGAACTCATCTAAAGGGGATGTGAAACCTAAAGGTTTGGGGAGCCTTAGCCGCTGCAGCCTCCTCGGGAGCAGGCCTGGGCTCCCTGGGATATCAGGGTATTGTAGGAACGAGGGGTGCGGTGTTCTTCTTTTCAATAACTCTCTTCCCGGTGTAAGACTGTCCTTGTTTGAAAAAGCACTGTGCATGTCCTTTCTTTAATCACATCTCTGCTTGACCTGAATCCGGGTATTATTCTCCTGTGCTGATGTGTGCTTCCTCCCTCCAGCACCCACAGAGCAATTAACGGCTGCCCGATACGTCTTGTGCCACCTTGTTTCCCTTATAGTTTCTGAATTTACTCATGTCCTCTATCAGTACACTCCATCCGCTCGGACTGCTGGGGTTCTCCATCCTCACCCCCAAGAGCAAACAAAACGAAAGCCAGCCTGCTGCAGGCCACTTAGATATCCCGCCAGTTGGCACTGATTAGTAACAGGGACAGCATCATGGTGCTGGGTCCAGTTTTGCAAGTCTTGAAAACCTGACACTATCTTGTGGCTGCGAAGAGATCCCCCCAGCTGTGTTTTTTTAGGGTTGTATTTGCGTCCTGTGGCTTCTATTCCTCAGACTAGGGTGGAGATGGGGTGCCCTGTAGTTACGAGGCACCCCTGCCTCAGGAGTCAGTGTGGAAGAGGGTTGGGCATTAATCTTAGCCCCTTGTCCTTACCTTGGTTACAGGGGTACAGGGTGTATCTGAAGTGGAGAGGCCACCCTTTGCCCATCTCTACGCCTCCCACTGAGCCCTAGTGAAACCAACTGTGAGTGCTCTTGACTGCCCAACCGCCAGTCTAGATCAGATCCTCTGAGGGTATGAAAGGGTAAGCTGGTTTGTTCACTGCTTCCCCAGCTTCCACTTCCACATAACTCACCAGTATCTTTGAGTGAAGAAAGATGTGGGTGCCCACGGAATCTTAGCCTAACTTGGACCCCTGTGAGCCAAAGATGACCTGGAGTTCAGCCCACTGGAAGCGCACACCAGTGCTGGCAGGCACGCGTTTGCTGCAGACCATCCTGTTAATGTTTAACCATCAGCCGCCACATTACCTGTTAGTCTGGAACATTTTCTTTCATCCTGGTTTAGAAAGCTGCCCTGTGATCTTCCCATAGTGGTTCCACAGTAGCGAAAGCAGCCGGTAACTGAGGGAGCTGAGGGGGAGCCCTTGGGTTTCCATGTTTACAAATAAGTCTTAGTAACTCCGTGCTGGATGTGCATTTTGCATTCAGCTTCTTTATCATAAGGGAGGAACAAAGACTGGGGCTCCTGCTGACATCTGCAGACACAAAGCTGAGTCGGAATTTGTGGTCTTAGCTTCGGTTCAGCACCAAGTGTATTTATAAGTTTGCAGTCATAGGTTTTGTTGTCCAAATCCCAACAAAGCCCTTTCCCACCTCCACCCCACCCCGGAAGTTATATAGGGTTCCTTGAAGGGACAAAGCCTCTAGAAAAAGAAAAGTCACTGAAAGTTGTAATGTGAAACCAGCAAAGAGAAAATACATGTTTGGTTTAGTTGTGGTCACAGTCCATGGTGAGAAAAGGGACTGAGATTTAAGTGGGAGGGAAAAGTTTAGGGAGGCAGAGTTTAGTGATTTCAAGGAGGATTTTAAAATGCAGATGAGCATGATGGACATGGGGTGAAGCCTTCATTCTGGGTTCCCCCCCCCCAGTGAAGTTTAAAAAGTGAGGCTTTGAAGGAAGACCACTTAAAAAAAAGGGGGGGGGGGAAGGAAATGACCAAGGAGGTCCTTGAGGGGTTTTCTAGGCTTGTATGCCTAGGTGGCATTTTCTTAAAATTCCTACACATGTTTTATAATGTAGGTCTGACATTTTTCAGTCTCATAAAGTCCCCCAAAAGAATGCTAAAAATGCCACAGTGGGGGCAGTTCTCCCTTAAAGGTCCATTTTGAATATTCAAATTTCAACTGAAATTCTTCATTCACTGTCCTGGACAGAGAGGCAGCCTGGCCCCCTCTGCCCTTGAGGGATATGCCCTTGGTCCTTCCTCCGATGATGCCCCGTCTTTGTGTTTGTAGGCACCTACATAGGGCTGTTTTTAATTCGTATAAACATGAAAGTGTTTAAGCTCTCCCTTAATGGTGGCCGCCTTTACCAGCCCAGAAGTCCCACATGTCAGCATGGACTACACCTCAGGAAACCCTCTCCATCCTCAGATGCTTTGGGTGGAGTGCAGACACAGCAGCTTCCCCTGCAAAGGCACCCCTGCCAGGTCAGATAATTACTTAGGTTGGTAGTCTGTCACAGTGGTTGAGGCTCATTTAATTTTTAGGAAGCAATAGATCTTTAATTGTTGAGCTGACTAGGGCTGTCTCCACAGTCCTGTAGGAGGAGCTGCGGGTTTATTATCTACCAGGATTCCTTCTGCTTCCTCTAACAGTTTTCTTAGTTGTTGAACAACACAAACCGAGGGACTGATGGGGAGAGGGAAGAACTGCATATTTTTAAGGTAGCATTGCTTATAAAAAGTCATCAGCTCAGCTACCTGCATTTGGGAGTCTGGGTGTTGAGGGCGGGGATTTATACAGCACCTGGCCTTATAAGTTGAGTATTCATGATAGGTGAAGAGGTGAAGTTTTTTGTTCATGAGAATCACTAATGAAAATCAGTTGTTTAGAATGTGAAGGGCACAGCCTACACTGCTAAAACACTCCCCCTAGTGGGAGTTTGGTAGAATACAACCAAGCCCCCTGTGTCCAAAGAGGGAGTTGGCCTTTCATTGTACTCCGGGTGATCTCTCTCCATTATCCGCGCAAAGGAAGGGCCCGAGAGCAGGAACAATTTGATCTTATATTTCTTTGGGTTTTGTTTCAAAATTTATTTTACTTTCTTTAAAGCTCTATCATGTTAAATATGTTCTGTGCAGTTAAAATAATGCATGTTCTTTGCTGAAAAAAAAAAAATAGAAGTGTAGTCTAGGATATACTGGGGACAAAGGGGAAGTAACCAGAGATTAAACCTTCTTTTAAAAATTACCAGTCGGGCGTGGTGGCGCATGCCTGTAATCCTAGCCCTTTTAGAGGCCGAGGAAGGTGGATCACCTGAGGTCAGGAGTTCTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCCACTAAAAATACAAAAATTAGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCGCCTGAACCCAGGAGGCAGAGGTTACGGTGAGCTGAGACTGCACCACTGCACTCCAGCCCGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAATTACTTACAAAGGCCAGCCACAGTTGCTTATGCCTATAACCTCAGCACTTTGGGAGGCCAAGGCAGGAGGACCCCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGGGAGACCCTGACTCTAGGGAGGGAAATTACCCACAAAGCCAGCAAACAAATTGAGCGTTCTGTATTTTTATTGTAGAGTTTATACCAATATCCATTCTATAGATGCTCTCTGTTGAAATGATTCAAGAAAAACGAACATCTAGTTTTTCCTTGGAATGTGGCCCAGACATTGGTGTGCATATCCCAGGACTCATATTCTTTAAGCTTTTGGATAATTTTGCAAAATCATTTCTTCTTTAAAATGTTATATTCACACCATAATATTTCTTTCTGAAACCTCTTGAGATACCCAAACAGTGGCTGCCAAAAAGTGCAGTCAGTGTAAAACTAATGAAATGAAATGATGTAAGTAGCCGCGTTATGCAGATGGCTGTGGGTAAAGCCTAAAGCCCCAAGCAGGTGTGAACAGTAGGTACTGTCTCCTCAGACCTCAGGACGGGGCAGAACCAGCTCCTTACCCCAGCCCTCCTGACCGCCTTGATGGCAAATCATCAAGCATGTGACATTGAGGAGGTGTGATGGATGCAGGTTGACATTGTAGTTACACCTGATCACGTCAAGTGAGAATCCAGGTTAGGTGCGTGAATCTGCTGGCTCAAGGACTGCAATCACATCTGGCCTATTGAGGGAGGGGCATCTCGTACTTGTGCCATAAAACAATGACTTTCATCCACCCAATTATCAGAGGAACTTGAATCCCTGCAGTAATAAATCAGACAGTGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTAGATCGCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCGAACATGATGAAACCCCATCTCTACTAAAAATACAAAAATCAGCTGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTCTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGTGGAGATCACACCATTGCACTCCAGCCTGGGCGACAAGGCGAAACTCCGTCTTGAAAAAATAATAAAAACTAAATCAGACATAGGATCTGCAGCTAAATAATAGGTCCCACCAGCTTCCAATGTACTGTCGTAATGCATAATTTTAAGAAGTTATTAAGTCTTCTTTCAACCTTAGTAAAGAGAAGGCCTTTTGACACTGTTTGATGTGAATATTGCAGCCGTGCCATCCCTTAAAAGGACTGTTGAAAACTGATAGGCTTTCCACATACAGTTTTACTGGGTGGAATGGACAGATAGGAACAAATCAAGAGGCAGGAAGTCAGGGTAGGTGAGATGCCTGGAACCCAGAACCCCTTGTCTTCACAGGCACCCACAGCCCTTCACAGTCCGCTCCCCTCACTGTGTGCTGTTGCCAAGCCTGGCATCAAGGGTGCCCTTCCTTTGAAAGATTCCACCACCCCTGGGAGGCTGACAGCTAGGAAGCCTACAAGCTTGCCTGCGCCCCCTTGGGTCTCTGCAGCCTCCACCTGGAGATGAGCGTCAGGCAAGAGTGTGCATACCATACACACACAACGCAGGCTTGGGGTCGTTTCCTGTGAAACTCATCAAGACCATGCTTTGGAGGATTAGGGGTAGGGGTGGTCCTGTGTATGTTGCATGTTTGTATGATCTCTTTGCACTGGAAAAATAACTTATAACTCAAGCTTCCTCAACTTCCCTAGCGCTGCGAGTCTCTGGAATGCACCCCTCTCCTATCTCGCAGCCCCTGTCTGCCCTGCCTGAGTCACTCACACCTTCCTGGGGGCGGGGGCAGTGGAAGCCAGGGGTTCAGGGGCACAGCCAGCCCTGGGAACACACCTGAGGTGATGTGGAGGCTGCTTTTGCCTTTCTTCACGTCCCCAGGGTCATCTTGGTCCTCCTGGGGGATGTAACAGGTGGTGAGGATTTGGGCCGAAAGAAGTCCTCACTGGTTTGGGGTTCAGGCTGCTGGCGTGGGTCTAGCCCATTCCCGGCGACATCCCTGGCATGGGCGTACCTGGTGGTGCCCCTCTGAGCCCTCCCCGCTGTGCTTGCCCCACAG
Seq C2 exon
ACAGTCAGTCGGATGCGGAGACTGCAGCCGCCGCGGGCGAAGTGCTAGACCTCACCTCACGGGACAGAGAGCAGCCGTCGGAGGGCGCCACTGAGCTCCGCCAGGTCGCAGGGGATGCGCCTGTGGAGCAGGCCACGGCGGAAACGGCCTCGCCGGTGCACCGGGAAGAGCACGGGCGTGGGGAGAGCCATGAGCCGGAGGAGGAGCATGGCACTGAGGAGAGCACTGGGGACGCCGACGGCGCGGAAGAGGACGCGTCGAGCAACCAGAGCCTGGACCTGGACTTCGCCACCAAGCTCATGGACTTCAAGCTGGCGGAGGGCGACGGCGAGGCAGGCGCCGGGGGCGCGGCCTCGCAGGAGCAGAAGCTCGCCTGCGACACCTGTGGGAAGAGCTTCAAGTTCCTGGGCACCCTGAGCCGCCACCGGAAGGCGCACGGCCGCCAGGAGCCCAAGGACGAGAAGGGAGATGGCGCCAGCACTGCAGAGGAGGGGCCCCAGCCCGCCCCTGAACAGGAGGAGAAGCCCCCCGAGACCCCGGCAGAGGTGGTGGAGTCGGCCCCGGGTGCCGGGGAGGCCCCGGCGGAAAAGCTCGCGGAGGAGACGGAGGGCCCCTCCGACGGGGAGAGCGCGGCCGAGAAAAGGTCCTCAGAGAAGAGCGACGATGACAAGAAACCAAAGACAGACTCCCCCAAAAGCGTGGCCAGCAAGGCAGACAAGAGGAAGAAGGTCTGCAGCGTGTGCAACAAGCGGTTCTGGTCGCTGCAGGACCTGACCCGGCACATGCGCTCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-RREB1:NM_001168344:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=NA C2=0.916
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.6),PF134651=zf-H2C2_2=PU(40.0=3.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)