HsaINT0145300 @ hg38
Intron Retention
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:124999891-125002043:-
Coord C1 exon
chr9:125001965-125002043
Coord A exon
chr9:124999991-125001964
Coord C2 exon
chr9:124999891-124999990
Length
1974 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TCTTCCCTTTGTTTTTATAGGTC
3' ss Score
11.83
Exon sequences
Seq C1 exon
GAGCTGCCTGCCAATAGCGTGCTTCTGATTTACCTGTCGGCCACTGGCGTTTTCCCCACAGGTCGTTCTGATAGTGAAG
Seq A exon
GTACAATAAAGGAATGCTCCCTGTTGTGAGCAGGGCTTGAATTCTCTTTATTTTCTACAAGACGATGGCCCGTAGCCCACAGACCATCTCAGCCTTTCTAGACAGACTTCCAAATTTGAAACCTGGTCTATTTGTTGATTGATAATTTTGTAGATACCCCAGTCTGTCATATTTTCTGAAATGTTATATGTCAAAGCCCATAAATCATCAGAAAATTCATATATTAAATGCTTGCTTCACTATCAAATGTATCAAAAGCATAATATGTAAATACATTTAGATATACATAAGGAGTTTGGTGTTTCAAAGTTGAAAAGGATGATGGAATAACCAAGCGTAATGATCTATTTCACATCATTGAATTTTTCTGAGCTTTCAGTGCATTGGGGAATCCGGTCAATGGCTACATGATGGCTGAAAGTCTTTGTAGAAATCAGTGTACTTTCGTAACTGTGAAAGTTCAAGCCCTTGTCATGATTTTGTTTTCTGTCCTTTATTTTGTTTTATGGATTCAATCTGTAGAATATCGGGATGCTGTTTCAGAATAAAAACGTAACACTGTCCAGAACATACCAGTCCAGAAATTGGTCAGAATAGATAAGTAACTTGGATGTAAATAAGATAATTAAATATTTGCCTGGGCAAAATAAAAAAATAAAAAAATTCTTAACATCCTTAACATTTTCCTCTTCATTTGTTTGTTGAAATTTGCATTCCTTTATAAAATGCATGTCCTTGCCATCTTCCTTGCATGACCTCCAGATTCTCTTAAAATGTTGAAATGAAAACAAATCTCTTTAGCCTTTTCATTGCAGTGATTTTTTTAAGAAGTGAAATATAATACAACATTAAAAGTAATGTAAAATCTTAAACTACTTTAGTTTTTTGTAATAATGTTAGTACTTTTATTTATAATTATCTGTATGTCTCATATACTGTTAAATCAAGTTTTCTTGGTTTCCGCTTAACATACTGACTTCTTTACTTTTTTCAAAGTATGATAGGTAATCGTACTTTGATAGGTCCTTTGAGAGAGATTATCTGAACATCCCACAGTTGCTGTTCCATTTGGACAAGAGTTTAGCTAATTCATATGAATTTAGTGGGAAAAGGCTAACTTCAGAACCAGAACTAAAGTGCTTGATACAATAGTGATAATAATGGATATTTGCACGCTGAAATCTGGCAATACATTCTTAAAGGTGAAGTTTTTGTGAATGAGAATTTTCAAATTCTATTCAAATATTTTTCTAAGTTTTACAGTTAGTGGCTCATTTAAAATTGTATTTACTTATGAGACTAAGATTTCATTCTTTAAAAAAAAAAAAGCTTATTTTATTCTGCAACTTCTTTTTTTTTTTCTGAGACAGGGTCTCACTCTGTCATGCAGACTGGAGTGCAATGGTGTGATCATAGTTCACTGCAGCCTGGGAATACAGGCACCTACCACCATGCTCGGCTAATTTTTAAAATTTTTTTGTAGAGACAGGTCTCACTATATTGCCCAGGCTGGTCTGGAACTCCTGGCCTCATGCAGTCCTCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCAACCATGTCTGACCAACTTCCTTTTAAAATAATATTGTTAAACCTGAGATTTTAAGTTTGCTTGAAATGTAAAGGTCATTTTGAACATCCCAGATCTCCATTCCTTTTATTACTTAGAATAATGATGCCATAGAGTCTTGTTTTGTTTCTCATTATATTCTGTTTGAAGAACTGCTGAATAATTAAATGTTTTTTAAAATGTTGAAAATGACAACATACTGAAGTCATTTAAATACTCCATTAAATTAAAATGTTAAATTTTAAAATAATTTAAATGTGTAATTATCTTCGCTTGAATCAATGAGAGATTCACACAGTACCTTTGTATTTGAACATCAGGTCAGTGTTAGTCTTCAACTGAAGTCTAGGATTCTTCCCTTTGTTTTTATAG
Seq C2 exon
GTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATATTATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611:ENST00000336505:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.287
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(5.2=100)
A:
NA
C2:
PF120703=DUF3550=PU(13.3=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains