RnoINT0131098 @ rn6
Intron Retention
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23384385-23387127:-
Coord C1 exon
chr3:23387049-23387127
Coord A exon
chr3:23384485-23387048
Coord C2 exon
chr3:23384385-23384484
Length
2564 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TCTTGCTTTTGTTCTTTTAGGTC
3' ss Score
12.84
Exon sequences
Seq C1 exon
GAGCTGCCTGCCAATAGTGTGCTTCTGATTTACCTGTCAGCCACTGGCGTTTTCCCCACAGGTCGTTCTGATGGTGAAG
Seq A exon
GTACAATAAAGGAATGCTCCCACTGTGAGCAGGGCTTGAATTATCTCTGTTTTCTACAAGACAATGGCGCACAGACCAGAGACCACCTCAAACTTTCCAAAAAAGCTTCAAAATTTAAAACCTGGTCTGTTTGTTTAGTGACAGTATTGGAGAGGACCTGGTTAATTCTCTGTGCTCATCTTGTATTCCTTGAAGTCCAAAAATCTTGACACAATACTTATGTCAAATGCATACTTCACTGTCAAATTTATCATACTTAGATTTATACATAAGCAGTTTGATGTTTGATACTGCAAAAGATTATGGAATCTGCCAGCGTATTTACTTAACATCATTGAATCACTGTAAGCTTTTAATATATTTGGGGATCTGGTCAGAGGCAGCATTATGGCTGAAAGTCTTTGTAGAAATCAGTGTACTTTTGTAACTATGAAAGTTCAAGTCCTTGTTATAATTTTATTTTCAATCCTTTTTTTTTTTTTTTTTTTTTTTTAGTTGTTGTTACAACAGATTCAGTCCATGCAATATTGGGATGCTGCTTCAGAATAAAACCTTAAATTATCAGAATATACAAGCCCAGAGATTGTTCAGACTAGATGAGCAATTCAGATATGAAGGACTTAAATCTTTGGAGAAAAATAGTTTTAACATTTTCAACATTCTCCTCCTCATTTGTCTGTGGCAATTGGCATTCCTTTATAAAATGCATGACCTACCATCTTCCTTGCATGACCTACAAAGTAGTAAAATGTTACAGTTGAAACAAAGCAAAGCAAATCGCTATAGTCTTTACATTGCAGTGGTTTTTGAAAGGTCTGTGATCCAACTGTGATGTGATGGGCTGGGGTGTAGCACTTACAGGCATGCACAAGGGAGAGAGAAGGCAACATGCGTAACTGCCTTAGTTCTTATTTAAACGTTAGTGTCTTTACTTGTATTTAAGTATTTGTCTGAAAACATTTTATTAAGGCAACTATTTTGGGTCTTCCACATTAGACTTTTAAATTTTGTAATTAGTATAGGTAATAAACTGAATGGCCCTTTCTCAGAGATTATCTGATCATCCTACAATCACTATTCAACTTAGACAAGAGTTAGCTAACTCTTATGACCAATTGGGAAAGGCTAACATGTAAATCAGAATTTTAAATTTCTATTAATAGTAGAATAATTAACTTTTTATGTACTGGAATTTGGCAGAATAGTTCATAAAATAAAGTTTTGTTAATCAGAATTCAAGTTAATTCTAATCTTTCTTCAAATTTTTCACTTAGTAGTTAATTTAAAATTATCTTTACTGGATCAGGTACTATAGTGTATCCCTATACTGCCAGCTCTCAGAATGCTAAAGCAGGAGGATCACTTAAGTCTAGGAGCTCAAGCCTGAGCAACAAGATAAGACCTGGATATATATCATGAATATATATCATATACTAAATATATATACATATATATATACTTAAATAGAGATTTCAGTTTGTAATTATCAGCTTTCTTTATAAAATACTTTTATTAAACCAGATATTGAATTTCACATCATGTACCACAGTCCCACTCATCTCCCCGTTCTCCGTATCTGCCCTCTACCCTTGCAACCTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAAACAGAAAATCTTGCCCTGGAAGCTGTGGTGTGTCACACAGTACACCCCTTTGTCCATGCAGCTTTCCTTGTAAATGTTCACTGCAATTAGTCATTGTTCTGCTTTGAGGCTCTGGCTTCTGGCTATACCATCAATACTGGGTCCTCACTATGACTCTTCTCAGATATCCTGTAAATGTTATTTTAAACTCCCAGGTCCCCATCCCTTTTTACCACCCAAATAAATGGATTGCTATAGATTCTTGGTTTTGTTGTTGTTGCTGGAGATTTTGTTTGTTATGTGTTTTTTTGTTTCGGGAATTTTTTTAAACAGAGTCTTTCTATGTAACCCTGGTTATCCTAGCTTTTAATTAACAGTGAGCTTATATAGACCTGGCTATCAGTAGTGGCCTCTGTAGACCAGGCTGGCCTCTAACTCACAGAGATCCATCTGCCTCTGCCTCCTGAGTGCTGGAATTAAAGACCTGTGCCACCATGCCTGGCTGTAGATTCTTACTTTGTTTCTCATTATGTTATATTTGAAAAGCTAGTAAATGGACTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGATCCTGAGCTCAATTCCCAGCAACCACATGGTGACTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTATACTCATATATGTAAAATAAATAAATATTAAAAAAGAAAAGCTAGTAAATAATTTAGTCATTTTTTAAACCATTGAAGTAGGCAATGTGCTGAAATAATGTAATTATTGCATTATAATAAAATGTTAAATTTAAAGATAAACACTCTGTGATTGTATCAAAGGGAGATTCACTGATACTCTTGTAACTGACCATCAGATCACTTGATGTTACCCTCCAGTTGAGTTCTAGGTTTCTTGCTTTTGTTCTTTTAG
Seq C2 exon
GTCCTTATGACTTTGGAGGTGTACTTACTAATAGTAACCGGGACATTATCAATGGAGATGCAATCCACAAACGAAATCAGTCTCACAAAGAAATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278:ENSRNOT00000039410:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(5.2=100)
A:
NA
C2:
PF120703=DUF3550=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]