HsaINT0146216 @ hg19
Intron Retention
Gene
ENSG00000146197 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:13655]
Coordinates
chr6:35182190-35195479:+
Coord C1 exon
chr6:35182190-35182280
Coord A exon
chr6:35182281-35195356
Coord C2 exon
chr6:35195357-35195479
Length
13076 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCCCCCTCTGCCCCTGCCAGATG
3' ss Score
8.93
Exon sequences
Seq C1 exon
CCAGCCATGGGCTCGGGGCGCGTACCCGGGCTCTGCCTGCTTGTCCTGCTGGTCCACGCCCGCGCCGCCCAGTACAGCAAAGCCGCGCAAG
Seq A exon
GTAAGGAAGGAGGGGCGCGCGGCCTGGGGGCTGTCCTGGCTGCTGGGCCTCAGGGCCTAGGAGCGATTCCCGAGGGGCAGGGCAGGTGCTGGGGAGCGTGCTGCTGTCAGAACCCGGCTCTGTGCACCCGGACTCCCCGGCCAGGGGCCCGACCGCTGGGCGCTGCGCCCCGAGCGAAAAGCCGGACAAGCTGGGGGCGGCAGAGAGGAGTGAGAAACTCTTGGGGGCGGTGGGCAGAAGAGACCACGCGCCTCAGAATTCCGCTCGACTTCATCCACTCCCAGCATCTTCGAAAGACTTCTTGTCTTCCAAAATCTGAGAGAGAATTTTCTCTTCTCTCAAACATTGCCAGAAACTTACGCTGTGGCCTGGAGAGACTGAGGGAATAATGAAAACTTTTCAGCCGTGCCGTATATTTCTTTCCCTTACCCCCAACCCGCATGCAAAGTTAGACATTTCTAAGTTGATGCCTTATCAGTGGAAAAATGTTGAAGAAAAATAGGATCTTTTATGGAAAAATCAACTCATCTCTCACCGGATGGTAGGGGGCTGAAGAAGAGAAGAAAATTTCTGTGACTGGCTCCCGACAGGAATGTTGCGTTTCTGCCTCTTTGGGGTGAAATCTCTTTCGTCTTGCATGGCTTTCATTTCTTATCATAATATTTATTTATTAAGGCCTCGGGTTTCCAATTCCATTTAAATCCAGGTCAGAATTGCATTAAAATAACAAAGTAGAATTCCAGGCCGGGGAGCTCTGACAGATCCCTCTAGGAATTAAAGAGAGACAGGGAGGCCTCCCGCCCCCGTCCCTGACCCCCAGCTCATCGCCTGGCAGGTCCCAAGGCTGTGCAGGCAGAGACTAGGCTGATGTACTACAGTTCTCTCGGGACAGTTTCTCCTCCCCCTTGACCTCTTGCTGTACCCCTCCCCCATCGTGTCCTCACCGACAAGAGATTTATATGGACAAAAAGAAAATTCCTCCTGGCAAGGTTTTGCCCAGGAGAGTATGATTCTGCCTATTGTCCCAGGGGCTCCTGAAGCCAGCTGGGTGAGGAGATGGCTGGGCCAGAAGGAAAGTTGAACTTGGGAGTTGGGGAAGCCTGAGTGTCCGACACAGGTCGCTGTGTCCCAGAGCCTGAGCGTTTGGCTCTTAAGCTGCTCTGTTGTATTGGATGGGCTCCTGCTCTGTGAAGAGGAAGGTGCTGTATCAATGCCGCCCTCCTCTCCCCAAACACTGCCTCTTCAGCTAACCTCTTCCCCCTCCAACCTGTCCTTTCACAGAACTGAAACACTAGAGATCCTCAGCTGTCAAATACTGGACCCTGCCCCCACACCTTCCAGCCCCACACTGCCTCTTTTCCAGTCCTGGTTCCAGACAGCGCATCGCCACTGCCACCCCCAACCTGGGAGCAGCCCCTCTCCTCACTGTGGATTTGTGTTTTCATAAACAAAGCTGGCTTTTGTAGTGTGTGCTGACTTACTCATAACATGGAATTAGGTGGGGAGTTTAGTCTGAAGGAAGGAACAGATATCATGAAGTAACCTAGAGACAAGATAAGGGCCTCTTTCAAGTTGGAGCCAGTGTCTGTAGTGGCCTAGTGAGGCTGTGGACCAAAGGAGAAGCAGTGTATTCGAGGGGGGCCCAGGGGCAGATGGAGACCCCTCCAAGGGACAGGTGCCATCAAGCCAAGGCACTCAAGTATGGGAGATCAGCTCATGATTCAGGAACGGGAGTCAGAATCCCTGCATGGTACTCCAGGGCTTCCACTTTCATTGGACTCCCTGCTGGGTACTGAGGAACATGCTGCCAGAGTGAAGGCCCCTGCCCTCAAGGAACTTAGAGTAGTTTTTGTCCCCAGCTTATCTCATTCACAGGCCACCCTTCCTGTGACTGGACCGCAGTTAGCTTGGTATCCTCCTTCTTTTCTTCTGATCCCTAAGCTTGGCCTAGAATGGAAGCCTTTCATTGACCCTTCTCTTCAGGAAATCTACAAACCCCATCTGCCAGAGGTTGCCTAATAGCAGGTTTGCTGGGTTACAGGGATGTCTCTGGACACAAACTTGCAGGCAGATGCTGCAGGAAGAACTAGTACTGACCAGGCGGGGCAACCTTACAGCCTTACCCATAGACACAGTCTGTGAGCATCAGGGAGGCCTTACCTTCAAACATATCTCCTGGTTATCAGCAGTGCCAGAAAGTGTGCCTTTAATGCCACATGCTTTATATAAAGCACTAGCAGGTCTTTAAAATCAAATACCCTTGGCAAGTATCTTGCACGGAGTTACTATACCTCTGGGGGTATCTGGGTTTCTGTCCCTTTTCATCAGTGATTCCCACAATGGGAAAACCAAAGTCATGTGGAAGGGGGGAAAGGGGGAGACAAGGAAGGGAGCCCTAAGTGTAAAGGTGAGTGTGCGACTGTGCACACATGAGAGGTTCACCACAGTTACCCACAGGCAACATAGCTGGATGTCTGTGTTTCTTGTGACGTAGTTGCTAAGGGTAAACTGCTGTTTTAGTGTCTGTGAGAACTGTATGGAAGAGTAGGTGGGTAAGCCTGTGTGACTGGGAAGGGAGGGAGCATGAGGGGACATGGTTTTGAGTGTTTTTCAAGTGCTTGTCTGTATATTTTAAAGTAGACAGACTGGATAACCAAGATAATTGTTAACTTAAAAGCATTAATTTGCTTTGCTTTTGGTAAGGGGGTGGGTGTTTGGCGGGGGGGGGGGGGGCGGGGGGGAGGCGCGGCGGGGGGGGGGGTGTGTGCAGCAGTGGTTAAAAAGACCTAATCCTCGCATAGGGCTCAGGTTACAGCTGAATGAAAAGGTCTCTCGGCCTCCAGGGAAACTTGTCCCCAGGGCTGGCTCCAGGAGAGCCAGCCTGGCCGTTTAGTTTACCTGGTAGTTTTCTCTCCTTGTTAGGGATAGAGTTTTGATAAAGTCATGCATTTAGAATTTCCAAGTAACCCCATCCCTGGGACTGAGAGCGTTCATGTGGTGGCAAACAGTGTCTCTCTGTCTCGGTGTGTCTCTCCGGGTCTCTGTCTGGGTGTATGTGTCTCTTTCTTTCTCCCACCCTTCTCTTCCTCTTTAATGTGGCTGTTTCCTTTCCTCCCCGCTTCCCTGGGCTCCTGTGGCCAGCTCTTACAGTGAGGGGACTGTTCCTACTAGCCCCTCCCTCCAAAATATGAAATGAAAACCATAACCATGTCAGCGGGTAAGGGTGGCCCCGTGGGCAGCCGGCTATTGCCTGTGCCCTGTCCAGGCCACACTGGAGAGAGGGAGAGTCCCCACTCAGAGCCTGATCTTTAGTCAGTTCCCTCTAAGCCCACCCCCATTTTTCCAGAAGGTGGAGAAGAGGGTGGACTGCTTAGAAATTCCTCAGGAATCCCTTTGACCTCTCTTCTCTCATGACATGTCTCAGAGGTGGGGAAAGCCTCGGGGTGGGAGAGTACAGAGACTTTTCCCTGTTTTCAACCCCTTCCTTCTCATCTCTTTGAGTCTCTGCAGGGTGGAATAAGAGAAAGGGGACTAGAAGACACTAAGGCCAGAATTACTGCAGGCAGAGAAAGAAGACAGTCATCAGCAGCCCTCAAATGAGATTGTTTTTTGAAACCTTCAGGAATCTGAGAGCATGAGAACCGGTTTGAGATGTGAGCAGCTGGGACCTGTTGTAAGAGGAGCCGGCCCTGGGTGTGAGTTTGGGAATGTGAAGTGTGCATTCACACACGTGTGAATGTGTGTGCATGACTCAGGGTGTGTGTGTGTGTGAAGTGCTCTGGTGAGAGGAAAAAGGAAGTGGGGCAATATGCATTTTGTTTTAGTTGGAGAAGTAAAGAAGTGGAATGGCTTGGTCCAGTGCCTTGAACTGAGGACAGGGGAAGGGAACGAAGGGCTTCAGACCTTTTGAGAAGATGGAGCTGGAAGAGCTTGCTGCCTGAACTCACTCAGTCCTTTCCCCCAGCTCTGGTCCCCAAATGTCAGGGTGTGGGCCTCCTTTGACATCCCGTATCCCTAGCACATGACCACTTATAAGAAAGAGTCCCTGTCAGGGCTGGAAACTGCAGAGCTGCTCTGAGGCTGGCAGTGCCTGCAAGAGGCCCAGACCTGGGGACAGCTTCTTCAGGCTCAGAAGACTGGAGTCTGGAAACAGAAGGACTGCTGGGCCTTGGGTATAGAAGCGAAACAACGGCCAACCCAGGGATGTCTAGGGGGTACAGGAGCTAGTCACCTGGGCTAAGAGGGGACAGAGACTCCCCTCCCCCACTGGCCACTTAACATTGGACTGGCTACTCTCCTGTTCCTATGCCCACCCAATGCCAGCCTCAAGTGGCACCGGGGATATAGAGGTATATGGTGCCAGTGGGTTTAGACAAATGCAGAGCCTAAGGATTTGAGCCTCGGAGGAAATCACTGAAATCCCTCTTCTCACTTGTAAAATATCAGTAGGGTTCCCTGCAGCCCTGAGATTCTGCACATCTCACTGAAATCCTTCCTGCTGAAGGCAGAAGGCGCCGGGCCTCCACAGGTTACTCACCCAAATCTCAGGCGCTCTCCTCCTTGGATGCTGGTCCACTTCTGCCTGCCTGAGGCTAGGTCATCTGGATACTCTTCCTTTCTTCCCCCACCCCAGTTTCCTGGAACCCCAAGTAGCTGATAGTTCTTACTGTGTCCATGAAGTGGGTATTTATCCCTGGAAATAGCCCCTGAAGAACACATGTGTGTTTCTATATGTGTGTATCCAACAAAGTTGGGAAGTGGAGCTGAAATATCCGTGTTATGGGAACTGAATATTCTTGGATCTGGGCCCCAGGATTCCGTGTTTCTAGCTCTGAGACTAGCTGTCTGTATTCTGCCCTAGCCTAGACATGTCCCCCTGCAGATCAAGCACTGCTTTGTAGTTGCTGTTAGATGCTGTGCTTTGGCTGAACAAATGGGATGATGACCCCTATATAGGGCACAGTGGTCCTTGCTCTTACCTCTGGTTTTCCCTGTGGTTATAACCATAGCCCTAGAGAGCTGTGGGGTTTGGATTTCTGAGCCTACACCAGGGGCTCTTCAGGTCTGGTCACTGGTGGTAACAAGCTGAGGAAAGACCTGGGCAGGGGCTGCAGGGCTGGAGGGAAGATCCAGGATAAGGAAACACATCTAAGGAATCCCTCTGAAAGTGGGGAGTATCAGGATATGTGGGCATTGGGGGGAGGGCTGGGGAAGGGGAGTGCTTGAAGGGTAGACCCTGGGGAGCAGGTTTACAGAGAGGACGTTTTTACAAGTTTCTAATTATATTTATTTGGAGTTTTCCTCTGGCGGTTTGAAGCTGTTAACAGCAGGAACCTGTATCCCTGGTGTTTGTTTTTGTTTCTAACCAGCTGCTTGGCCCCAGCATAGTGAATCCAAGGGCAGGCAACACCTGCCCACTGTTGCATTGCCCACCCTTTCCTTATTGCAACTGTGTCTGTACCCTCCCTGCCCACTACTCAGCCTTGCTCTCTTCTGCTGCTCCCATGCCCAAAGCCTCAGAGCATCTGCATTCCCACTGCTGATTTCCTCCCTGGATCATGTACATTTCAGCTCCTTCCGCTCCACGGTTATATACTGGATGCATGCTTCATGCTGAACTAAGTGCTGAGGTGGAGTTGGGGGAGGTACAATAATGACTAAGGCATGGATTCCTCCCTCAAGTGCTTAGAGAACACAGTGGGTAGTTAGAGAGCACTGGACTGGGAGTTTGAAGACCTGGATCCTGGCTTTACACTAGCTACTTGCTCTTTCCTGAGGTATCCTCACTGGGCCCCAGATGAGAGAGGACAGTTTGAAGACCACGTGAACCAACCTGCATGAAAAAACTGTACACTTAGTGAAATTATACGAATCTGAAATGAGTTTATTTTTTTCAATTAAAGAGATAATATTACTAATCACAAAACCAGAACCTACCCATGCCCACTGCCTGCCTCTCTGCCCCTCACTCTACAATGTTCTGTTCTTCCCCCACTTCACTACCCATCCTCTAAAAGTCTCTGATTCATGGTTGTTGATTTTGTCCATACTGAAAGGGAGAAAATTCTTGTCCAATTAGGGTTACATTCAAATGATCAGGGAGCTAGATTAGGGATAAGGCAGGACAACAGAGAGAAACTCATCAGGGTCCCCAGTAAGTGACAAGCTTCTGAGGTTCAGACCCCCTTCCCTTCAAATCACCAAACACCAGCAGCTTTTCCTGGCTGTTCAGTTGAGCAGGCTAAGCTTGAGTGAGAGGAGAGGATACTGTTTTTAAAAGGAGAAAGTGCTCTGTCTCCGCCTTGGAATCAACAGGTGGTCATTTGTGTGGTTTTCTGGACTTTCTCTAGGCTACCCTCATCCTTGCATAAGCTTTTTCTAGACTGAGGATGGGCCCAGACTCTCACTGAAGTCACAGTGCCTCAGCCAGTCCCAAACTGGGAAGACAGCCTGGTACTCCAGGCTCTGCCAATCTCCCTGGTTGCTATTTTGATCTGGAGGTAGAGCAGATATGCAGATGTGGGTACATGTGCACATGCTGTGGGTTAGGATATCATGGCCCAAGGCTGGGCTGGTTTTATTTTGGATGTTACTTAGAGGTGAGAATGAGGGAAATCACCAGGGGCAAGCAGTGGAATGCCTGTGTCAGGTGCCCCATCATTGAGAGTTAGCATGGAGGCTGAGGAACATCTGTTGAAGGGGATGCTCTGAAAAGATCCCTGTAGCAGCCCCATATGATGTCTGAAGACCCTGAGACCCTATGACTCATTGGTTCCAGTCTCTTCTGGCCCCAGCACTCATCATATGGATGCCTTTAAGTGGGTACTACCCCTCTGAATTTAGTTTCCTCTCTCCCTACTCTCCACTTGAGACTAAACTTCCTGGGACTTCCCCCATCCAGAACAGTTGTGGGATCACGGAGAGTAAAGAAGTGAGATTTTTCTCTGAGGTAACATAGAGCAGAAGGGATGCCACAGATAGAGACATTATCCACTCACTACTAATGCATCCATGTCTCCATCCACTCGTCTATCTGTTTAACAAATATTTACTAAGTGGCTTCAATGTAGAATTCATCTCTGGTTCACTGCCAAATCCCCAGCACCTAGCACGGTGCTTCGCATGTTGGAGGTGCTCAATAACTATTGAGTGAGTGAGTGAATGAATGAATGCTGAGCTCTATTTCAGTTGCTGCATGGGTTTCAAAGCTTTAGGAGCCATGGCCTCAAGCTCCTACTGCTTCAGTAGGAAAATTATACACATGAACTAAAAGTTAAATAATGGTACAAGGTAGCATATGAGGTATCACAAGCCTGGGATTGATCAGGTGACCAGAGAGCCTGACAGTAAGTCTTAGGAGTCAAGAGAAAGAGTAGATCAGAGAAGGCTGGTAGTGTCACAGGGAGTGTCCCAGCAGAGGCACCTGAACTGGGTCCTCAAGGACATTCAAGGAGAGGAAAATAGCAGAGTGCGCTACACACACCATATATCCTGGGCTAGCCTGGCTGGGCTGAGGATGTCACAGCTATGTGGGTGGGTACATTAGGGCTCTAGGCAGGCTGTTTCTGACTGTCCCACTGGGCCCATCAAATTTGCCCACAATTACCCCCTCCCCTATGGGTGGTAAGGTAATAATTCCTGTGGTAATGGGAAGGTGGGGTGGACTCTACCTAGGGGGTCTGCTTGTCCACAGCCGGCATCCCTGCTCATTTCCATTTGTTACTGTTCCTGAGCTGGGCTTGGGCAAACTTGTGAAGTAGATGAAGTATTTACTTGGGAATCCCACTGCTTCCCTTTTAGGGTACACCTGCCCATCCTCAGAATCTTAGGACTACTTGTTTTATAATAATCCACCCTTTCTGGTCTGACCCTCTGACCCTCATATCCCATACCCCATCCTACCCTTCCTACCTACTTTAGGAGAGTTTATGGAGTGCTCTGCTAGGCGCTAAAGCAAATTCAGAAGAAATGTCAGATGGTACTGGGAAAAGCTGCTGTAGTTACAGACCTGTGCCTTCATGCCAGGACAGGGCGAGGCAGGGAGGTCTTGGCTTGTCTATGGTATCTGTGCAGCCACCACTCTCCCCCACCTCAACTTTGGTTCCAATGCATGGCCTGAAGTAGGAGTGGGATCTCCCTAGCCTTCAAAAAGAATTGTAGAGGACAGCTTTTGGGTTCCCAACTGGCCTCTCACCCACTTCACCCCCATTCTTTGTGCAGTTCCCAGCACAGGTAGAGTAAGCAGTGGGGATGTGTCTCCCCAAATCCTCCCCACCAACACATGCTCACCTGGTGCTGCATTTCCCCACACCAGGCCTGAAATGGGGCTTTGATAGGGAAAGGGAGTTCAGAAAGAATACAGGGAGAAGGTTGGAGAGAAGGAATAATAGTAGCAAACCTTGGCTAGGCATGGCGACTCACACCTGTAATACCAGCACTTTGGGAGGCTGACATGAGAGGGTCGTTCAAATCCAGGAGTTCGAGACCAGCTTGGGCAACATAGCAAGACCCTGCCTCTAAAAATTTTAAAAAATTGGCTGAGCATGATGCCACGCGCATATAGTCCCAGTTACTCAGTAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGATTTCGAGGTTGCAGTGAGCTATGTTCATGCCATTGCATTCCTGCCTGGATAAGCAGAGCAAGACCCTGTCTCTGTTTCAAAAAGAAAGAAAAAAATAGCAAACCTTTGTTGAGCACTTTCTATATGCCCACACTGTGGTGTTAAGTACTTGATGGGTATTAATTCAACTGATGTTCCTGGAAGCCCCATGGGGAGGTACTATGATGAATATTATTCCCACATACAGAGGAGGGAACAGGTAAGTTCAGAGGCTGGCCCAGGACCACACAGACACAGGTAGAGCTAGCAATTGAACTGACAATGTTGCTCCAGAACCTCTCTCTTAACTACTCTGTCATGTGGCTGCCCTGGTCTCTTCCCAGCTTGGGCAAATAGTTTATTGGCATTACCTTGGGAAAGGAAGACAGATAGTAGCCACAGCCTCACCCTGGAGATCCTGATTCAGCTGGTCTAGGGGACATCTGTACATTCACATTTTTTTCAAAACCCCCAGGGAATTCCAGTGTGTAGCCCCAGGGTTGAGAACCGCTGGTTTAAACCAGTCCACACCCAGTAGCATCAACTGGTTTTCCAGCTAGTAAGCACCTGCATCCTGAGAGAACAGGCTAAGATGAGACTGTGCTGTGAGCGTTGAAGGGTCCTTGCAAGGACAAATTCTGGGTGGGCACATATGGTAGGAGAGAACTCTGGAAGAATGAGTGGTAAAAGGAGGAGATACTGGGTATAATTTGGGGCCCTCTTTCACAGCTTTGTCTTAGGTCTGTTCTGCTTCAAAAGACTCCAACCAAACATTGAAGGGACATCTTCCTCAGCAGGTACCCAGCCAGGTGAGGAAAGCTGAACACGCTTTAAAGTATTAGCAGAGCAATTCAGTGACGGCTGTAAATGAACTGAGGAGAACAGTCCCCTTGGACCAGGAACTCACCAGGAACGGGGCTTACAAGGAAGAGCTTTTGGGAAGAAAAATTTGAGCTGGAATGGAAAGCTGAGCATAGTGTGGCTGGAAGAGAAAAATGAGGAATGCATCTGCAATGTGAATAACGAAAATACGCAAATGCATAGAAAGGAATAGGATGGTTAGGTATTGTAGAGGGAACAGGAAGAGATAATGTCTTCCAGAGCAGAGACTCTTTGCTGGAGAGGGATAAGCATTGTGAGCAGGGAGGTAAGGGAGAGGGGTTAGTTAGATGGTGGGAGAAGTCTGGCTGTAGGAGGGGTCTAAAAAATCTGTGGCCAGGTGTAGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGCGGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATGTGGCAAAACCATGTCTCTATTAATAATACAAAAATTAGCCAAGTGTGGTGGCACATGCCTGTAATCCCAGATACTCAGGAGGCTGAGGCAGAAGAATAGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACACCACTACTGTACTCCAGCCTGGGTGACAGACCGAGACTTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCTGCTGGGAGGCCTGGGTTTGTGGTGATCAGCATCAAGATCCACTCTAGTACTGGTGAGCACTGAATGGGAGGCAAAGGAAAGAATTGGGAGCCCATATAGTCTGACACAGTCTCTAGTGAAGCACCAGCTGATTCAGTCACAGGCACATACCTCTGATATGGTCAGGGGAGCAGTTCCAGACCAGTATCCGTGCTGCTGGACCCAGGGAGTATCTCTTATTCAGAACCCCAGAGCAGTGCTATCCTGTGGTGTGCTAATAGCAGTGCTATTTCTGTGGTGTTGGAAATGTTCCATATCTATGCTTTCCGCCATGGTAGCCACTAGCCACATGTGGCTATTGCGCATTTGGCCTGTGGCTAGTGCAACTGAGGAAGTGAATTTTAAATTAAATAACCACATGTGGCTAGTGGCTGTCATACTGTCTCGAGCATCTATTGCCTGACCAGTGATTTAATACCATCTCAAGCTTCCTGTATTGGGACCCTACTGTTTACCAGATACTTTATTAGCCAATTTACACAAATTATCCCATCAGCTACTCACAGCCTCTCATGAGGAGGTATTATCATCCCCATTTTAAGGGGGAGGAGATGGAGAATAAGAAAACCATCCCTAGAGAAGGGTAGAGCTGGATTTGAATCTGGGACTGACTGGTTCCAGTGCTTAAGATCGTTCTGTGATAGCACATTTCTTTGTACTGTTTTCTGTTTATCAGTTGGACAAACTGATTCTCCACAGAGCACCTTACCATCTGCGAGGTCCCTCTTGCCCTTACCTATGAACTAGTCTTCCATGCCCTCTCTTTTCCATTCTGTCACGTTGGGATGACTTCCCAGGATGGGCCAGCAGGTAGACACCATGCCTATGGAGCCTGAGCGAGGTGGAGAGTAAGTGTAGACAGAGGCTCCCAGCACTTAGAATCAACTGGTATGATGGTTGGCTGCATAGGAGTTGAAGGGTAGAATGAAGAGCTGAACGGAAACCTGTGAGATTTGAGGCAGGGTGTTTGGGGATTTCAGTTCTCTTCTTAGCCCCAGGAAGTTTCAGAGTATAAAAGCGGAGGACAGATAACTGTCTCAAGCTAGGACTCTGGGTATCTATAAATTGGAGAGAATACTGGTCCATGCATCCATTCACTCAGTAAAAATAATCACTTAAGGATTTGGATTCAAAAAGGCTATAATGAGTCCTGAGAATCTGCATTTTAATAAAACCTAGGCAATTCTATGGCCCATAGATCACACTTGGATATCAAATTGTCTTGGTGTCAAATCTCATCTCCTTTCTGTGCTCAGTTGTGGGATCACAGGAGAGTAATGCCTCCCATTCAGTGATCACTCACTTGCAGGCTGCTACTTAAGACACTATTTTGGGTTTCCCAGTTTCCAGCTGGAAGTAATCTCTTTCTCCTCTGATCTGCCCCGTAACACAGGTTCTCAACCTTGACTACACATTAGAATAACTGGAAGAGCTTTAGAAAAATACTGATGGCCCGGCACCAGTCCAGGCTATCTGACCAGAATCTCTGGGGTTGTGGCTTGGACATCTCCTAGGAGAGTTGACTCTGATGTGCAGGGTGGAGGACCCCCTCACCTTATCTCTCATGTCTTCAGGGCATGTACCACATTCTGCTCCATGTTTTTTGTTTCTCCTTTTGGCTGGGCTGAGTCACCTTTGAGCCTCCACAGCTATCATTATAGTGTCTTTCACAAACACACTCAATAAGGCGTTTTCAACTGAATAACATGTTTCTCTATTTCAGTTCAGATTTAAGGGCACCATAATATTGCCTCAGAAGTTGGACTCTTTTCTATGTCCTTTTTTTTTTTTTTTTTTTTTTGAGATAGAGTCTCACTGTCGCCCAGGCTGGAGTGCATTAGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCCTGGTTCAAGCGATTCTCCTGCCACAGCCTCCTGAGTAGCTGGGATTACAGGCACACATCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCATCAAGGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCATCATCTATGTCCTTTCCTAACCATCCTCTTTTTTGCTAGATGGTGAGTGGCCTCTTCCTTCAAGTATAGCTGTGTGTGTAGCACCTATTGTTAGAGCTAGGGCCAGGAGACAGAGGGCTAAACACTGGGGATTAGGGCCTGAAGGGCTGCACTTATTAGGCTTCAGGTAGCTGGTGCCAACCTCTGCCAGCTCTGGATGTCTCCATTGTTGGCAGCACAGGGGCCGAGGAAAATCATCCAGGATGGAACATTTTTCCTCTAAAGCTTCTTGGCTCCATGGTGGGCAAGTGGAAGCAGGCCTGGTCTCAAGCAGAATCATGACACAGATGAAGATCCCTCAGATGCCCCATCCCCCTTTCTTCCTCCTTTACTAGTGATTGCTGGACCCTGCCACCTTCCCAGAGACCACTGTTCCCATGCCTTTTCCCTTAACTTTCCCTCTAAGCCTTCTCCGTAAACTCATTCACTTTAAGTTGATTATTCCTAATCAAGTTAAGTGTACTACCCACTCTAAGGGTTTTTTGTTTGTTTTCAAATAAAAAAAGGAGTGTTTCGAATGATGGAGTTTTAGCTGTCACTGTGAATTTAGTATTTTTGAGGGCAGTGGGGGTTCCTTCTGAATTCCCAAAATCAGTGTCTGCCTACTCTGAAATCAGAGAGATGTGAGACAGCACCTGTTTCTGGAGGGGGTCACTGCCTCTGTTTTAGAGAAGAGGGGATTCTGCCCTTGGAAGCCCACCTTCAAGACACCCCTTAAGAGGTGCCAACAGAGGTTCTCATGTGCCCCCTCTGCCCCTGCCAG
Seq C2 exon
ATGTGGATGAGTGTGTGGAGGGGACTGACAACTGCCACATCGATGCTATCTGCCAGAACACCCCGAGGTCATACAAGTGCATCTGCAAGTCTGGCTACACAGGGGACGGCAAACACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146197-SCUBE3:NM_152753:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)