HsaINT0146696 @ hg38
Intron Retention
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136448084-136451408:-
Coord C1 exon
chr9:136451256-136451408
Coord A exon
chr9:136448162-136451255
Coord C2 exon
chr9:136448084-136448161
Length
3094 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
CTCGTGTTTTTTATATTTAGGGT
3' ss Score
9.7
Exon sequences
Seq C1 exon
ACCCCCTCGAGGACGGTGCCAGACTCGGAGGCCCCCCCAGGGTGGGATCGTGCCGACTCGGGTCCCACGCAGCCACCTCTGTCTCTCTCACCCGCTCCCGAAACAAAGAGACCCGGACAGGCAGCCAAGAAAGAAACGAAGGAACCTAAGAAG
Seq A exon
GTAGTACAGCCTGCCCACGGTGCGCCTGGCGGCCGGGAGGGTTTGGGCAGGAGGCACGCTTCCCAGAGCGCCATCCTCTTAATTCACCACACATGCAAATAGCCTCCTGATACAAACAGCCGAGTGTCTACAGTGCACACGGCATGATGGGTGTCTGTGTATTTGTGCCTTCAGATAATAGGATAATAGCCCACCCAGGTCAGCATGGGGACACAGCCCGGCCCCCAGAGGTCGCCTCTGGCCACTACCTGTCAGACCCACCCGCAAGGGACCAGACGGCAGCCGCTGCTTTGTCACTGTGGTGTGTGCCTGCTGCCGGCTCACAGATCCTTTCTCCCAGCCGTGGACTTTGGGACTGCTTTCAGTGTGGGGCTGGGATCCGTCAGGCCCCAGGAGCCTCCTTGCCTATCTATTGGCGAATGCGCTTGTTTTTCTTAGGTGCGTGCCAAGGAGCTGAGGGTTTAGCTCGCAGGATGAGCGTGTGTTCAGCTTTAGGAGACACTGCTGAGCAGTTGTCCTAAATGGTTGGTTGCCCCAAGTCACACATCCTGCAGCAGAGGACAAGGGCCCTGGATATCCCTCATCTTCACCAATACTGGGCAGTGCCGGTTCTTTAACTTAGCCATTGTGCTGGGGCTGATGACATCTCATTGTGTCTTCCTCTGCATCTCCACAGCGAGGTGTGACGCTGGGCACCTTCTCGTGTCCCTGTTACCATCTCACCACTCTTTTGGGGCAGTGCTTGTTCAAGTCTCTATCCGTTGTTTTTTTTTTCCCCCATAAAGATGGGGTCTCACTATTGCCCAGGCTGGTCTCAAACTCCTGGGCCCAAGTGATCCTCCTGCCTCGTAGCTGGGACTGCAGGTGTAGCCACCACACCTGGCTTTCCTTTCCATTTTTAATGGTGTTCTCTTCAGGACTTGCAGGAGTCCTTTCTGTATTATGGATATAAGTCCTCTGTTAGGTGTATTTATTGTGATATCTTCTCCCAATCTGTAGATTGCCTTTTTACTTGTAATGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGGTCTCACTCTGTCAGCCAGGCTGGAGTGCATTGGCATGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCTCCAGTAGCTGGGATTACAGGTGCCCACCCCACTCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTTGGCCTCCCAAAGTACTGGGATTACAGGTGTGAGCCACCATGCCCGGCCTAGTAATGGTATTTTATGAAAAATATCATTCTTCATTTTAATAAAGTTCAGTGATCAGATTTTTCTTTTATGGCTGCTGTCTTGAAAATAAACACACATTTAATTCCAAATTTGTGTGAGCTCTGAGATAAAACATGATACTTGAGCAGGTTTCCAGTGCATAGGCTATCACAGGCCTCCCCGGGACAGCTTGTCTGGCCAGTAGAACTCACAGAGAAACAGAATTGAGGGTGTGTAGTAGCTGCTGAGGCTTCTCCTCTTTCTTCAGTAGAAGTGAAGTGCATCAGGCCGGGCATGGCGGCTCACACCTGTCACCCCAGCACTCTGGGAGGCCGGGCGCAGCAGCTCCTGCCTGTCACCCCAGCATTCTGGGAGTCAGGGTGCGGCGGCTCACGCCTGTCACCCCAGCACTCTGGGATGCTGAGGCGAGCAGATCATGAGGTCAGGAGTTCACGATCAGCGTGGCCAAGATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCATGCATGGTGGTGGGTGCCTGTAATCCCAGCTACTCAGGAGGTTGAGGCATAGAACTACTTGAACCCGGGAGGCAGAGGTTGCAGTGCGCCGAGATCGCGCCATTGCACTCCAGCCTGGGGGACAGAGCGAGACTCTGTCTCAGAAAACTAACAAACCAAAATGAAGTGCATCATGTGAAGAATAAAGTAAAGTTTCCTAATAACCGAATTCTCCACACATGGGAAACACAGAGGGCTGTATCTGCCTCCGACACACACTGACTTGGACAGCCCGCCTTCCACTTCTCAAAGGGGAGGACGTCGGAAGCTTTGTCAGTGTTTAGACGTAAAAAGTTCCTGAAGGCACGTTACTGTTCTGACCTATTTAAATGACAGTAAAATACACAGAACAAAATGCACATTTTTACCATTTTCTGAGTGCACAGTTCTGTGGCACCAAGTACATTCACACTGTTGTGTTGCCATCACCACCATCCATCTCCAGAACTGTCTCACCTTCCCAAACAGAAACTCTGTCTCCTTGAAACGAAACAACTCCCGGTTCCCTCCCACCTCCATCCTCCTGGTGTCTCTGGATCTGCTTCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCTCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCCCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCCCCCGACCTCCATTCTCCTGGTGTCTCTGGATCTGCTCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCTCCCCACCTCCATCCTCCTGGTGTGTCTGGATCTGCTCCCCACCTCCATCCTGGTGTCTCTATGGATCTGCTCCCCACCTCCATCCTCCTGGCGTCTCTGTGGATCTGCTCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCCCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCTCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCGCCCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCGCCCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCTCCCCACCTCCATCCTCCTGGTGTCTCTGTGGATCTGCTCCCACCTCCATTCTCCTGGTGTCTCTGTGGATCTGGCGACTCTGGGGCCTCACAGAAGTGGGTCATGTAGAATTTGTCTTTTTGCCCTGGCTTATTTCATGGAACATAATGTTTTCAAAGTTGTTCTCGTGTTTTTTATATTTAG
Seq C2 exon
GGTGAATCCTGGTTCTTTCGTTGGCTACCTGGAAAGAAAAAGACAGAAGCTTATTTGCCAGATGACAAGAACAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396:ENST00000371706:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development