HsaINT0148398 @ hg38
Intron Retention
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132353649-132354985:-
Coord C1 exon
chr9:132354917-132354985
Coord A exon
chr9:132353756-132354916
Coord C2 exon
chr9:132353649-132353755
Length
1161 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
TTTTTGTTTTTTAATTTCAGAAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
CTTCCGCTGGTGGCCTAGAGCGGGGCCCGGTATGGAGGTGGGCTAGAGGCCGACGCCAGCCAGAGAGCG
Seq A exon
GTGAGGGTAGCGGCGGGCTGGAGGCCGTAGGTCGGGCGGGCGTGAGCGCAGGCGCGGCTTGTGCTTGCAGGGCCGCTTCGGGGAACCATCGCGGCGCCTAGGTCCCGGTGGGCGGATGGGGGAAGAGTCGGCGCGGGCTCGGCCGCTTCCCTCGGTGCGGGGGCGGGAGCACCCCTCGACGGCTGGCGGCCGCCTGTTGCCTTCCTGCGCGCTGGACCCGGCCGCTGCGACCCCCTGTCCTTCCGTTGTCTACACTGCGGTCTCGTGTGAGCTGTTTTTGGTGTGGATACTGCGTAGTTTCCTTGGGGCTGAGCGGGAGGTCTCGGGGTGGAAAGTGTCGGTTCCCTCCACACGCTCGTCTGCCTCTCGCCTGGAGTCCCTCCCTTTGTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTGAGACGGGGTCTCGCTCTGTCACCCAGGCTGAAGTGCAGTGGAACAGTCACGGCTCGCAGCAACCTCGTCTTCCTGGGCTCCAGCGATCCTTCCGCCTCATCCCCCCGAGTAACTGGGACCATAGGCGCGCGTCACCACGCCCGGCTAATTAAAAACAAAATGTGTTGCAGAGACAGGGCCTGGCTGTGTTTCCCAGGCTGAGCTCAGCTGCTCCAGGGATCCTCCGAGCCGCCGCGCCCGGCCGGTCCCTTCGTTTGGAGGAGAGTCTGTTTCTCCCACTTGGAGGGGCTGGAGCTTTTGCTGCTGGCCACAGGACTTTGTCCGTCCTCCCCAACTTCTGGGGATCTAAGGATGTGCCCAGCAATTTGCACGACCCAAGTGAAACGGGGGTGACTGCCTTGAGGGAAAAGAGCTCCACAAGGAGAAGGCCGAGTGTGGTATTTGATAAGTGACACAGCTGAGGATCCTAGGATTGATGTTACCTGCGCGGGCTAATAACTTGGGGGATTTTTGGCTCGGTGCCTAGCTGTCCCCGTGAGTGGGGACAGCCCCTTGTGGAACTGGGAGTCAGAATTGCAGTTCTGCTGTTTCCTGGAAGTCCACAGCCAAGTTGTCTAACCTATCTGGGCTTCCTCATCAGCCAGCAGTATCTGTCTGTAATAGGATCGATACCAGGCTCAGATGGGATATAGAGTATAAATGCCACTTACCAATTTCGTTTTTTGTTTTTTAATTTCAG
Seq C2 exon
AAATGTTCTTTTGGGGCCAGAGTCTGGGCATATATGAATGCAAATCCGTGTTTGTTCACAACTAAGCCCAGCTGAGACGATCACTTTTCTGTAGGCCATTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290:ENST00000224140:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains