HsaINT0148418 @ hg38
Intron Retention
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132336296-132342799:-
Coord C1 exon
chr9:132342690-132342799
Coord A exon
chr9:132336516-132342689
Coord C2 exon
chr9:132336296-132336515
Length
6174 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TAAATATATTCTGCATTTAGGTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
ACGAGTTATGTGTTGAAGCACTTTGTCGGATGGAACAAGCCAATTGCTCCTTTCAGGTGTTTGATAAACATCCAGGGATCTATTTGTTTTTAGTCCATCCCAATGAAATG
Seq A exon
GTGAGTGTGAGTGTTGGGCGATAGAAGGGTATATTGTGCTTTTGTACCTATAGATAGCTATAATAGCGGTTTTTGGTGTGGATTTTGTTTAAAATGTTTGCTAAAATTTTTCTTGCTTTAAAATTTACTACAGTTAAGTAGAGGGCGCTCTGGGGTCAAAGAAGAGGGGATCTCAGAGGGTAGGGGATACTTACCGACAGGTGATGCTTGATCTTAAAAGACAAACGGGAATAACTTGATGTCCTTTCAGTATGTTGAATTGAACTCAAGAAGACCTCTTCTCTTGACTTTCTCACCTGCTTGACCCACTGCAGACACATGGAGATACCGGTTAAAACATTTGAAAAGTTATTTTGCTGATAGATTAGAATTAAAACAAGGGAAGGTAGGGAGGGAGACTGGGAAATTCTGGTGCTAGAGATGAAGAAGGACAAAATCCAGAACAGTGAGCAGGAACAGAAGCAGATAGCATTGAAACCTGACATAGCCCTTTGGCTAAGGTTTGAGATCTTGTCACCTTTTGTGGTAAGACAGTCTGTGCTTCAGGTCTCATGCCTAATGCCACCTAGAACTGAGTGACTACATTAAGCCAGTAGCCAGGAAGGGCTACTCTGCCAATGTAAGGCAAGAAAAATTACGTTTTTTAAAAAAAGCATGGTAATGGGATTGCCAGTCAAGATGATGGTGAATTTCAGTTTCCTCTGGGCCAAACACATACCAATGATATTAAAAAAAAGCAAAAGGAGGAAATTAAAGGGGTATAATCACATTCCTCCAAAGGAAAACTTATTTCTGTGGACCAGCAATGGAACAGAAACATGAAGTAATAAATGAGTGGAAACCTGGCCTGGGTGGCGGTGGGTAGCTCGGGATTCAGCTTGTGCAGGACAACAGGAATTAGAAGTATACTCCAGGCAAGGCAAAGAACCAAAGCCAAACTCTGCACTCCAAACAAGGGGCGGATGGGGGTGCTTCTTTGCCTGTGAAAGAAGGTTGCCAAAGTATTAAAAAGGTTCACTGGCTTTTTAAAAGCTGTTTACATATGGAGGAAGCAGGTCTGGTCTTGTAACCAGTGCCTGGGCGAAGCACTTGCAGCCTTGGTGACTGAGTCTGCCTAGCCCTTATGTAACCAAAGGTTGGGAGCCCTGAGCTGCTGATAGTAGACCTAGTTCTGGAGCAGGACTCTCAAGGATGGATAGAAAGCAGCCCAAATTTATATTTAGGAAGGGGAGGGGTAGTGGTAGGAGGGACACAGAATTCCTCCCTGTCGGATGAGCTTGCAAACCAAATCCCTGAAACACACGAGGAAAGCGCATGCTCTGACAGAACAAAGACCAGCACTGTTGGTCCTTTCTCTAGGTTTAACTCTAGAGGAACTTGAAAGAGAAAATGGAGAACATTGAGAGAAACTCTGAGTTGACAAGGGCTGGTTTATTAAAAAAAATTTTTTTTATTATTATATTTTATTTTTTGAGACAGAGTCTTGCTCTGTTGCCCACGCCGGAAGTAGAGACAGGGTTTCACCAGGTTGGCCAGGCTGGTCTCAAACTCCTAACCTCAAATGATGCACCCACCCCGGCCTCCCAAAGTGCTGAGATAACAGGTGTGAGCCACCACGTCCAGCCGACAAGGGCTGTTTTGAAAGGTGAATGTGGGAGATGGGGAGGAGAACATCCTTAGTTTGTGAATTCCTTTTCACTCTGGGGTATTGGGTCCTATCTGGCAGTGCCTGTGGGAGGCACTATGGAATTACCTCTCAGAGCATTCTCCCACAGCCAGAGAATAAAATGGGCTGTGGGAGAATAAAGTAGAAAAGGAACTGTTAAGGTTCTGCTTCCAGTTCTCCCTCATCATTGCCTTAGATGAATAAAACCTGCATCCAAATCTGTTCTCAACTAAAAGATCTGATCCAGGTGAAGGTAGGAATGAAATCAGCACAGTGGATAACCCCTAATATTTGTGAGGCACTGAGACAAGCAGGTGGAGACCAATTAACCACTGATAATTGCTTCATTATCATCCCCTCTTAACCCCAGGACTTGGGGGATTACAGCCCAGTAGTGTCTTCTAATGCTGCTTCTGCCCGGGAGTAAAGGGTGACGACCTGACTTAGAAAACTAAAATGCGTGGCAGTGAGTGAGTACGTTTTTCTGGCTTGGATTTTATCCATCACTCAGCCCTGAATTGATTGGGCATAAGCCAGTCTGGAGTCTGGCCTTCCATAGGCACCGCCTGATAGGAGCCAGTACCCCAGAGTGAAAAGGAATTCACAAACTAAAAATAATAGACATATGAGAAACATGAAGATTTCAGTAGAAGCAGATATATTAGGACACTTGTCCAGTAAATTTAAAATTATTATAGTAAACATGCTAGAAGAAATACGGGAAGATACTAATGTGAAATGAGAACTAGAAAACGTGAGAACCAACAAACCTACACATTGTGCACATGGACCCTAGAACTTAAAGTATAATTAAAAAAAAGAAAGAAAATGTGAGAACCAAGCCAAGTTGTTGTAACATTGAAAAATGAGATATTTAAAATAAAGGCTTCAGAAGATGGGATAGATAATACAGTGGGTACAGCCAAGAGAATGAGTGACTGTATTAGAAGACCAGAATGAGCAAATCCCTAAGAAGAAAAAGAGAAATAGAAAATATAAAAAGAAAAGCTAAAAGATAAATGGAGGGTAGAAGTAGTAGTGTTAACAAAGATGTAAGACGTCCCAGAAAGAGAAAAATAAAAATCAGGACAAAGAAATACCGGAGATATGGCTGGGCACGGTGACTCATTCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAATAATACAAAAAAATTAGGCAGGTGTGGTGGTGTGTGCCTGTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGATGCAGGGGTTGCAGTGAGCCGAGATTGCAACATTGAACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCACAAAAGGAAAGTTGTACTATATGGAAAGAGAGGTTAGATCCCTACCTTATTATCATTCATAATGACAAAATCTATCTAAAAAACCATAGTTAGGTTCAGTTTTCAAACTCTTTGCAGGAAATAGAGGTGTACAGCATTTAGATTGTAAGGTGAGGAAAGATTTGTTTTATTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATGACAGCTCACTGTAATCTCTGCCTCCCAGGCTCAGGCATTTCACCAAAATCTCCTTCCTCGGTCACCATGCCCAGCTAATTTTTTGTAGAGATGGGGTTTCACTGTGTTGCCCAGGCTGGGTTCGAACTCCTGGGCTCAAGTGCCCCCATACCTCAGCCTCCCAAAGTGTTGAGATTACATGCATGAGCCACCATGCCTGGCCTGAGGAAGGGTTTTATAGAAACGAAAGCATTGATTATGAAAGGAAAGTTGATGAACTTGACTATATTAAAATGAAAAGTTATTGTTTATCAAAAAATACCATAAAGAGAGTGAAAATACTAGTTAAAAATTGGGAAAAGGGCTGGGCATGGTCGCTCATGCTCGAAAGCCCAGGCCTTTGGGAAGCCAGGGTTGGAGGATTGTTTGAAGCCAAGAATTCAAGACCAGCCTGAGCAACATAGCAAGAACCTATCCCTACAAAAAAATTTTTTTTTTAATTAGCTTGGCATAACGTTGCACACCTGTAGCCCTAGCTACTCAGGAGGCTAAGGTGGGAGGATCACTTGAGCCCAGGAGGTTGAGGCTGCAGTGAACCCTGATCTGCCAGTGCACTCCAACCTGGGCAACAGAGTGAGACTCTTTCTCAAAAAAATAAAGTAAAAAATTGAAGATAATCATATTACTAACAATACAAAAAATATGGATGAAGATCTGAACAGGCATGTCCCAGAACAGAAGAGGAACTACCAATAGCTAATAAATATATGAAGGAATGTTTTCTATTTAATGATCAGGGAAATAATAAGACCACAATGATATACCATTTTATTTTTGTGTGATAGCCTGAGAATACAATTTTGGAGAGGTCATGCATTTGCAAAACCTCTAGTTATTGCTGGTAAAAGGTCTTATTTAGCTGTCACGTCCATTTAGTCCTCTTTAATCTGGAACATTTCATTGTCTTACATGAAAATTACTTTTCTGAAGAATACAGTCATTCCTGCTCTGCCTCTTTTTAAAAAAATAAGTGAGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTATGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAGCATGGTGAAACCCCGTCTCTACTAAAAATAACAAAAGTTAGCCGGGCGTGGTGGTGCACCCTTGTAATCCCAGCTACTTAGGAGGCTCAGGTAGGACAATGACTTGACCCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATGGTGCCACTGCATGCCAGCCTGGGCGATAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAGAGTGTTCCTCACTTTGGGTTTGTCTGATGTTTCCTCATGCATAGATTCAGGTTACACATTCCCAGCTGGAGTACCATGTAAGTGATGTTACTGTCCTTCTCAGCTTGTCATATGTAGACAGAGGCACGCCATATCCTTTGCAACTCATGGTGATGTTAATTTTGAGCATTCGGTGAAGGTGCTGTCCCATTTCTCTGCTGTGTAATTTCTATTGTTTAGATACTTTAAGACCATGTAAATACTATGCATTTCATCAAGATCTCCTAAATTTAGCATTCATTAATGTGTCTTGCCTGAACTATGGTGATTGCAAGATGGTCATTTCCTAACTCCAGCACTCTCCATGTTTACTATTTACCACTTGACATTGATTGTACAGTAATCAAGAGTCTTTTCCCCTTCTACCACTTATTATCAGTAAGGTCTCATGGATTCCAAAACTTTTTCAGTAGTTTATAATTTGTTGCTTATGTTGGCATAGAGCTCATGCTTTTACCTGTGGGGTCTGTGTTTTTCCAACTTTTTGATTACAATCTGTAGTAAAAAATGTTTTCCTTGTGTATGCATATGCCTATATAATGTATTTTGTAAAATAATACTTTTACTATGAAGGATGCACTCTTGATATTTTTCTGTTCTTGTTTTTTTTTTTTAAGGTTGGTTGTGAGCACTAAATTTAATTCATAGTCTCCAAGAAATTTAAAATCACTTCTTTATGCTATTCTGCCATTTAGAAATGCCCTTTGATTTCTTTTGAGATTCCTCATTTTGTGTTTTCTTTCCTTTTTTGGACATTCTGTTATGGAAAATGATAAACATAAAAGTAGCAAGAATGGTGTAATGAATCCCCCATAATCCATCAGTTAGCTTTATCAATACATGGTCAACATTCCACTCCCCTTTAGATTAGTTTAGAGCAAATCTTAGATATCAGAGCATTTCATCCACAAAATATTTCAGTATGTATTTCTAAAAGATAAAGACTTAAAAAAAACGAAAAATATTATTATATATATATTTTTTGAGATGGAGTCTTACTCTTGTCGCCCAGGCTGGAGTGCAGTGGTAGGATCTTGGCTCACTGCAACCTTTCCCCACCAGGTTCAAACAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGAGTGCACCACCAAGTCCAGCTAATTTTTTTGTATTTTTAGTAGAGACAAGGTTTTGCCAAGTTGGCGAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTACTGAAATTACAGGTGTGAGCCACTGCACCCAGCCAGAAAAATACTATTATTGCATCTAAAAGAATAATTACTTAATGTTGTCTTGCCAGTCAGTGTTTGAATGAATGGAAATGATTGTCTAAAACTGTTTATTAGGGGTTAGTATGTTCAAATCAGGATCAAATAAGGTCCACACATTGCATTAATTAATATGTCACATGTCTTTTAAAATATGCAGAGAATCCTGTTTTCTTTTCTGTGTTCTTGCTGTTTGTAGACCATTGTTTATTGAATTAAGTAATAAATATATTCTGCATTTAG
Seq C2 exon
GTTCGGCGTTGGGCTATCTTGACTGCAAGAAACTTGGGGAAAGTGGACAGAGATGATTATTATGACTTACAAGAAGTTTTACTTTGCCTTTTTAAAGTCATTGAGTTGGGGCTTTTAGAGAGTCCAGACATTTATACTTCTTCTGTCCTAGAGAAGGGTAAACTGATTCTTCTGCCCTCACACATGTATGATACTACCAACTACAAAAGCTATTGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290:ENST00000224140:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains