HsaINT0149316 @ hg19
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152100507-152108615:-
Coord C1 exon
chr4:152108575-152108615
Coord A exon
chr4:152100550-152108574
Coord C2 exon
chr4:152100507-152100549
Length
8025 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GTTTATTCCTTCTTCAACAGCTT
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCAAGGACCCTTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq A exon
GTAAGTTTGTTTTTTCCTTCTCTGTATTTTCCTCTGTAATAATTTTAAGTGATGATTTAGATTTCCAGCAGGTGATTGTATTTGACGAATCTACAAAGAACCCAAGAGTAGCTTCTCCTAAGAGGTATTAAAGCATTTCAGACAAACAGCTACTTTTCAGCCTATATTTATTGATAAGCCGGTTTCTCAGAACTGTGTTTTTCTCTTGCAGAACAAAGCTGGGGTTTTTTTTCCTTAATCCCAAATGTGATACTATAAAGCTGTTTGTTTTTTTTTTTTAATTTGCCTCTCTAGTTAGTTTCTGTGATCTAATATAAATTTTATGTAGCGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCTGACTCTACTAAAAATACCAAAAATTAGCCGGGCGTAGTGGCAGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAATTATGTAACCATTTTCTAGAGTTAGAGATATCTAACAGGTTTAAGAAATATTAAGTCCTGGCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTTTTGGGGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCCAAGACCAGCCCAACCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAGAAAAGAAAAAAGAAGTATTAAATCCTGTTCCTTTTGGTTCATTTGTTTCTACAGGTACTTTTCACAATATATTTTTTAACTGTATAAGTGCCTATAAAGACGGGCTTATACTACCATATCAAGATAGAAGTGCTAAGAGTAGAATTCCCATCAGAAAGGAACATTTCTATTTTCTGTCCTTATCTCTTGGTCAAAACTTCAAAACTTGCTATTAGTGTGGTATTTTAACACTTTTTTAAATAAAAGGCTCTGGAAAGATCTCTTTAAAAATAGAACATGGATTGCCTGTGTTAGAAAAGGATAAAGATAGGATTTTAGATGTTCTTTGCATTATCTGAGCTGAGGTTACCACCCCGAGGAGAATGTGCCCTATTTTTAGAAACATAACTTGGTTGTTTTTCCCCCCCGATACATGGTCTCTCACTGTCGCCCAGGCTGGACTGCAGTGGCGCGATCTTGTCTCGTTGCTACCTCCACCTCCTAGGCTCAAGCAATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCACATTGGTCAGGCTGGTCTCCTGACCTCAAGTGATTTGCCCGCCTTGGTCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCATGCCCATTATGAATTTAGGATATTCACAGGTCATGAAGAATATGCATTTGAACAATTCCAGTGAAAATTTTACAAGCTGACAATACAGAAAAATATGCCATGTTTCCCCACTCCATTTTTTTTCTTTATTGGTGAACTATAAATATGTGGGAATGCTATGGTATGAGATGAAGAGAATTCAGATATAAAAATGAAAACTTCTTGATAGCCTTTCATGCCTTATAACCCTTGGGTTGTGGGTGGCAGGCGATGACGGGCAGAGAGATAATTTAAATACAAAATTAGGATCTAGAACTTAGGCAAGAATTTATTGGCTGGAGATATAACTTAGAGTAATCACTGTTATAAGCAAAATCCTGGAAGTAGCCAAACATGTAGGGAGAAAGTACACAGGATAGGAAAGATGAGAAGGGATAGAATCTTGGAGACGCTGACGTCTGAGGACAAGCTATGCCTTCAAGAGGCATAAGGCAAAAATGCATGACCCAATGAACCCAGCCCTGCTGTGAAAGGCCTCCTTTCACTGAGTCATATCTGTGGGCTCCTGCACTTTGTTCCCTGGCTTCTTGCCTTAATTCCCTTGGATTTCAGGACTTTTTTGTTAGGGAATCACAATCTGTGCCTGACTTCCCATGGATCCCCCAAGATAGATCTTGCTCAGCGAAGACATGGGCAATAAAAGCTTAAAAGGAATGGTCAGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGACACAGCTGTGTTTTAGAGGTCAAAGGAGAAGATTTTAAAAGGAACAGGTGAATCACCAATAGCTCTTAATACTAAACCAGGCCAAGCAAAAGGTGCTGAGAACAGGTTATTGTGTCTGGCACTTAGGAGGTCAATTGAGACCCACGAGAGAGCAGTTTCAGTAAATATTGAAGTTGGAAGCCACACTTCAATTTCAACAATGAATAGAATATGTGGAAGTTGGGGCGGCTAGGGTAGCCTACTCTTCTATGAAATTTGGTGGTGAACAGGAGAGATATGGACTGTAATTTGAGAAGGAGGCAGAGTTAAGGAAAGAGGAGATCTGACTATGCTTAGGATGAGGAAGCATGAAGACATTTGTAGGCAGCAGGGAAGCAATCAGTGGAGGGATCAGACTGGAGCCATGAAAGAAGAGAAAACGGTGAAACAGGGCCCTAGCAGAGAGAGGAAGGAGGATATGAAACAAAGGGAAAAACCTTGCTTTGAGGTAGCTGGTGTTTTTTTGGTTTTTAACTCAGTTGTCTTTTAATTCTTCTGTCAGTCGCTTTGTAAACACTAAAGAAATACTTGTATTCCTGATGTTTAGGCAAGAAGGCCAAACAGATCCTTTCATGATAACATATAAATACAGAATGAGTAACAATTGTGCCATTCCCTTTTGTTTTCTTCTTTTTGCCTATTCTATAAGAAAAAGCTGTAAATAATTTTTATCTTAGCCAGCCCATTAAAATGTGTGTGTTACTATCCCATACTCAGTCATCTAACCCTGGCAAGCGGAAAGACTTTATCCCATTGTTAAAGTGATATTCTTTAACTGGTTGTAGTTCAACTTATTTCATAATGATTCCGGTTCCAGTCAAGCCTTGGGGTCCTTTTCTTTGCATGTATTCTTGTGAATCCTGAGTATTTTTGGTAAAGTGTTTTGATGTATCCTAATTGGATACATCTAGAATTTTATGTTCTTCCTTTCATTAACTTTTTAAGAGAAAATTATTTTCTGAAATTCAGACTTAGTTAATATTGTTTACCTACCATGAGTCAGGAACTGTTTCCATACATTATAAAATAACACTGTGCGTGGTAGGTGTTGACCCATTTTACATGTGGTAGTGAAACTGAGTCCCAGAAAGGTTAAGTGGCTTCACAAGGTAGAGCCAAGATATGAACCTTGTTTCCTGACTTCAAGGCCATTGAGCTTTCCACTCCACAGACGTTCTTGTTATCATGTCAAATGCATCTAACTCTTATACCCTGTCCCAAACAAATGTAGTCAGTAAGTTTCTTATATTATTGTGATTTTCATTGATCTTTCATTCTTAGTTCATTGATCATTCATTCATAGTTCTATAGCAAGGGTATTTATAATTAATAATCCTTCTATGTGTTTATTTCTTCTGACATCATTTTATTGATAATTTTGAATTATTTAGATCAAGACTAGCTAGCATCCCACTCTCCTGGCTCCACACAGAGTTAAACTGCTTCAAGAAACAAACTGCTCCTAGCCTTGCTCCTAAAGGGCTGTTGGACCTGGGGTAATTCATTTAACCCCTCTGTATCTCAGTCTTCTCCTCTGTGAAGTTTGAGTAGGACGATCGCTGAGGGTCTTTCCAGGCTTGTGATCCTGCTGGAATTCGAGAAGATTCTTTATTGGTGGTAATACTGCACATCTACATCTCAACTTTAACATGAATATGTTTTGTATTTAGAATTTAACCACTTGAACTCGAAAAGTTTGAAAATAGGCCAGGCACTGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCAGGAATTCGACACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAACCCGGCGCAGTGGTGGGCACCTGTAATCCCAGCTACTAGGAAGGATGAGGCAGGAGAATCGCTTGAACCTGGAAGGCAGAGGTTCCAGTGAGCCAAGGTCGTGCCACTGCACTCCAGCCTGGGCGACAGAGAGAGACCCCAGCTCAAAAAGAAAAAAAAAAAGAAAAAGTTTGAAAATAATTCTGTAAAATGATAGGATAACTCTAACTGAAAATACTGCCTTTATTCTGTGGCATTAACCCAAAACGTACCAGACTAGCAGCTTGTGGCAGAGAGGTAAAATGGGACATGCTTGTCTATATGGCAATCTGGCAAATTCGATTTTCCTGGCAACTACAGCAAATTTGTTTAATCTGGGAAAGTGAGAATGAAATGTATAAGCAGATAGTTGAGAAATTAGCACAAAGAGCATGAGACAACACATGAAAATCTGCAGTGAAAACCAAAAGTGTTTGTAGCTATTAATCTTGTTCAGCACTGACAGAAGGTGTCAGTTTTTCCAGAAGGATCAAGAGAGAAAAGAAAGATTTCATAGATAAGTGAATGTGAAAAAAGCCAGACAAGGAGAGGGGAAAGCAGTGATTCTTGAAGGTTGTGCAGAAGGACATCTGTACGTACGACTGCAAGACCCCTCCATGTTCTTCAGCGGCAGTGCCACTCTGCTGCCTGGGGGCCTGCTGTGAATGACCTCTGGTGTGAACGGGCAGAATCAAGTTAAAATTGCTGATTTTAAACAATGTAGATCGACTACTGAATTACCTTTTAAGTACTATTCATACTTTAAAATCAATGCTTATTGAAGTAGCAAATTGATTTTGCAAAATAGTTTTTAGATTTTTTAAAACCGTTGTTAAAAACTGCAGACAGGCCAGGCATAGTGGCTCATGCCTGTAATCCTAGCACTTTAGGAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAAGTCGAGACCAGTCTGGGCAGCATAGCAAAACCCCGTTTCTACAAAAGATACGAAAAGGAGCCAGGTGTGGTCGTGCATGCCTGTAGTCCCAGCTACTCAGGGGGCTGAGGCAGGAAGATCGCTTGAGCCAGGGAAGTCGAGGCTGCAGTGAGCCAATATTGTGCCACCGCACTCCAGCCTGGGTGACAGAGCAAGACCTTGTCTCAAAAAAATAAAAAAAAAAAAACCCTACAAGCGGGTTTTTCAACTGGTTATGTGTGTGGATATCCTGGTCTGCACAGACAAATCTTTGCGGCAGTATTTCTTTACTCTCTGAATCTGTGGATCATCAACTTTGCTTTTCCATTTAAGTGTGCATAGCAGGGAAAAACAGTGGTATGGCAAGACAGTCATGCTCCTGAATTCCTTTTAAAGCTTAGGCAACTAGGTTCACTCTTTTCTCTTCCTTTCCTCTTCTATAACCCCTTCTTTTTTTCCCTTAGCACTCATGAATAGTACACAGCAAAAATGCCCCGTGGAAGAGGTATGTTTGTGATGATAACATGAAGTCTTTTAAAAGTGTTATCCCTGCTGATTTCAGCATTAGTGATGGTGGTGATGTGATTGTAGCAAACTTGAATGGGCCTCTGACTTAATGAAACCATTCTTACAAATCAGACACACCATGCAGAGCTCTAGCCTCCCTGTCAGCTTGGTTTAGCTCTTGATAAAAATGTTAATAGTCAGTCAAACCAGTTGATGATATGAATATGAGGACATCCTCCAAGTAGAAACCCAGGGGTTTGGTTTCAGATCTTAGAGGTTTGCTTTGCCAACCCAGCAGAGGTTCACCTGTTACGGCTCCAATCCAGCCTAAACTTCATTCCCACCTTCCACTTCCACCCCTGCCTCCCCTAGTTTTGACAGCCTCCTTGTTCAGAGAGAAGCAGAAGTTAATAGGGGGGAAAGATCTATGCTTCCAATCTTTTCAAATAGGAAGAATTGAACAAGTTGAGTATTACTGAGATATGAAAGCAACTGGTTAAAATAGTTTATATCTGAAACAAATTTCCTTTGTGCACAGATCTTTACACTATAGTATTAGAAGATTTTTTTCCCCAAAGAGATCTTTAGAATATGTTCCATGAAAAATAGAGGTAGGCCGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGAGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCAGGCACCTGTACTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCCATCTCAGAAAAAAAAAAGAAATAAAGAAAAATAGAGGTAATAGTCTCTATTACATAAAAATTGAAAAATTGACCCCATATGTGTCGGGCGCAGTGGCTCACACCTGTAAAGCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGGTCGGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTATCTACTAAAAATATAAAAAATTAGCCAGGCATGGTCGCGGGCGCCTGTAGTCCCAGCTACTCTGGAAGATGAGGCAAGAGAATGGTGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAGAAAAAAAAATGACCCCATATGTGATATGTTCTAGATTATCCGATTAAAACTTAGTTTACTTTATAAAATAAAATTTGGGAAAAAATTTAAACTATCAAGCTTAAGGACTTGAGTTTGAGACTTAAGGAAAAAGTCAGTGCTGCATATACAATAATATGTGCTATAAACAAGTTTATAAAAGTGATTTGAACACCTTTTACATTAATTATTATATCTTAGTTTAAGTAATAAAAGGCTGGGCATAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGAGGATCGCTTGAACCCAGGAGCTTGAGACCAGCAACATGGCGAAACCTCATCTCTGCGAAACATACAAAAAATTACCAAGGCATGGTGTCATGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCTGGGAACTTGAGGCTGCATTGAGCCCTGAACATCATGTCACTGCTCTCCAGCCTGAGCAACAGGGTGAGACCCTGTCTCAAAATAAATAATAAAACAACTTAAAGGTTATAAAATGTCAGATAAGTTAGACAAAAGATGAAAATTTGACCAGTTTCATTCTACAATAGATTTATAAACAAACATCACAAAAGCATAGTCATATAGATTGGAATCGATATTTAAAATTTTTTCTGCCCATTGTTACTTCATGTCATCATCTTAATACTCCAGCCATGCAATTTATATTTAATAGCTGTCTTCTTTTCTCTGTTCATTCTTCAAACTATTTTCACAACTACAGAATGTTCTTTGGGGAGTTTTTGAAATCTATGTATTATGCAATCTCTAATATATAACCATAATTAACTTTATGCTAATAAAATGATTGTTTTGATTTACTTTTTTTTAAGGATATTAAAATTCATACATTCTATATGATGTCAAGTATAAGCTTTTTCCAATTGTGTACTTTGTAAAAATTTAAACCCTTACCAAACATACTAATTTTGTACTATACCAGTTTATTCCTTCTTCAACAG
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686-SH3D19:NM_001128923:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)