MmuINT1031116 @ mm10
Intron Retention
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86075153-86080437:+
Coord C1 exon
chr3:86075153-86075188
Coord A exon
chr3:86075189-86080394
Coord C2 exon
chr3:86080395-86080437
Length
5206 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
AGTTTGTTTTTCTCTCATAGCTT
3' ss Score
7.94
Exon sequences
Seq C1 exon
GACCCCTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq A exon
GTAAGTTTGTTTTCTTCTGCTCTGTATTTTCCTCTGTAGTCGTTATAAATGATGGTTGAAATTCCCAGCAAGTGATTGTATATGATGAATCTACCAAGGACCCAATACATATAGCTTCTCCTAAGAGCTAATCATGTATTTTTGACAGCTGGTTTTTCACTATCATTGCTTGATAAGTCAGTATCTCAGAATTATACTTCCCTCATACAGTCAAGCAACTTAAATCTGGAGCCGGGCATGGTGGACATGCCTATAATCCTAGCACTGGGAGGTGGAAAGGGGAAATCCAGAGTTTGCAGTTATCCTTGGCTACATAAGGAATTTGAGGCCAGCCTGGGCTATATGAGTCTTAAAAAATAAAACCAAAAGCCTTAATCTGGCTATGTAGTATCAACAAGCAGATGGAATTTTATGTAATATTTTTTCTAAAATAAGAGATATCTATCTGCTGAATTTAAAAAATATTAACCTCTGGTCTAGAGAAATGGCTCAGTGGCTAATATCACTGCTATTCTTCCAGAAACCCTGGGTTCAATTCTCAGAATCCATATGGCAGCCCACAACCATCCGTAACTCCAATTCCGATGGATCCAATGCCATCTTCTGGCCTCCAAAGGCACTGCATGCACACGGCAGACAGTCATGCAAGCAAAACACTTATACACATAAAACACAAAATAAAAAATGCCAAATCCTGTCTCTTTCGTTAATTTAGTCTCTTTATGAAATTTTCAAAAGCTAAAAGTGTAGCCTGGCAGTGGTGGCACACGCCTTTAATCCCAGCACCTGTGAGGCAGAGGTTGGCAGGTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAATGAGTTCCAGGACAGCCAGAGAAACCCTGCCTCAAAAAAACTCAACAGATGCCTATAAAGATAGGCTCATACTTCTACGTATAGAAGTGCCGCAGTAGAATTCTCTCCAAACTTAACATTTATATTTTTGTGACTTTCCCTCTTGGCTGGTGCTTTATGATTTGCTGTTGGTATAGGATTTTAACCTTTTGTAAATAAAGGCCTTTATTTAAACAGAACAGGGATTACCTTTTATAGAAAAAGTAAAGACGGGGTTTTAGATGTTTTACTCTAAAACTGGAGTGGAGATTACTACACTAGAAATAATATAGCCTATGTTTAGGAATATAGGTTTTAATATTTAATATGGAGTTAAAGCATCCACATGTCACGAAGAGCATGGCTTTGGACAGTTGCAGGGAACAATCGGTGTGATGGCAATTCATAACAACCTGTTGTCATGGCAGAGAGGTCAGTGGTTAAGAGTGGTTCTTTGGTGGAGTTTGGTTCTCAGCTCTCATATTGGGAGGAAAAAGATACAAGAGACAGGATCTTGTGGTGTCTCTTACAGCTCTTCTCTTTAAGGGACAGTAATGGAGGAGATGTGTGGGCATTCCGTGCCCCACCAGCTGGCGTCTTCCCTCTCCTTCCTGGAATGTGAGGACTTGCACTTTGTCCCTGACTCCCTAGGTTCCCCGGGACGGAGTCTGCTTAGACTGTGCAAGGTAAAGAGAAGGCAGTTGAGGATAAAGGGGCAAAACAAACTCAGAAAGAAAGGCCGGAGTTGTGGGAAAACCAGGAGCCGGCTGCCTGTGGGGCTGAAGGAGTTCTCTGTGGAAGGATACGAGGCTGCTGAGGCCGAGGAAAGGGGTCAAAGCACAGGCCGGCGTGTGCCGTGCCTGGGGGTCGGTGGAGATAGCAGCCACCGTAGAACATGTCAACACTGACTAGAACCAAGTTTGTGAGTAAAAATAAATGAAGGAGGGGCTGGTGTTGGAGACAGGAAAGTCTAGCAGAGGGAACCTGGTTATAGGCTACCGAGGATGGGGAAGTTTGTGGCTGGAGGAGAAGCAGTGATCTGGGAGAGCAAGACAGGGCACAAGAGAGGAGGAAGCTGGCACAGCAGCCCCAGCAGAGGGAGGGGGGAGAAGATGAAGCAAAGGGGTTTTGGGTTCTAATGATCAATTTGTCTTTTAATTCCTATCTGTCATTCACATGGTAAAAAACTACATGTGCCTGCTATTGCTCTAATGCAAAAACAAGGACAAATGGATACACTGCCCTCATTCATATAACCATAAAGTGAGGAATAATTACCAACTACACCCCCATTCTCCCTTTCGCCTATTGTTTAAGAACATTTGTAGGGCTAGCAAGGTGACTCAGTGGTTAAAAGCTGGATGCTCTTCTGGGAACCTGGAGTCTGAGTCCCAGCATTCACGTGGCAGCTCACAAACATTTGTGACTCCAGACCACAGAGATCCAGTGTCTACTTCTGGCCTGTGTGGGCACCTGGCATGCACAGAATACACGGATATACACGCAGGCAAAACATCCATACACATAGTTACTGATGGTTGTGAGTGCCCATGGTGGGTGCTGGATATCTAACCTGGGTCCTCTGGAGGAGCAGCCATTGCTCGTAACCATTGAGCCAGCTGCTCCCTAGCCCCTGATTTAAATAAAGCAACAAACAATTTCTTAAAGGAGAAAGTTGTAAATTTTTTTTTATCATAGCAGTCAACTAAGATGACCTATTTACTGGTATGTAATCAACCAGGCATCTAACCCTGGCAAGAAGTCAACCTTTGTTCTTCCTTAAAGCAACATTACACAGCCAGTTGCTTTTTAAATTCCTTAATAATGATTCTAGATCCAGTCTATGGTGGGATTTTGTGCATTCATTCTTTGGCTCCTAAATATGTTTTAATGTTTTTTTACATGTGCTAATAGGACATATCTGACATATCTGACCTTTTTTGAAGACAAGGTTTTTGATATATAGCTCAGACTAGACTGGAACTCACTATGTACACCAGGCTGGCCTTGAACTTATAGTGATTCTCCTGCCTCCCAAGTGCTGAGACGATAGGTGTGTGCCATGACTCTTGGCCTTTTCATTAACTTTTTAGACAAACATGTCCCTAGAATCCAGATTCCTCCAACACTGCTCCCATACCATCAGTTGGGAGCTGTCTCGCATTAGGAGGTAGCACTTTCTAGGCAGATTGTGAGCGGACCCTGATTTACAGCTGAAGGAAGCTGAAGCCAGGGAGGTTTGGTTTACAAGGTAGGCCTGCGATGTGGGTGAGACGTCCAGACTTGAAGGCACAAGTTTGCCTCTCTGGATGCCCTTGATGTCACATCACACTCATCTGCTCACCCCTGTCCAAAAAAATGTCGCCTTTGAGCTGTTTATTATTGTGACTTACCAATAGGGTGGTTCTATAGTCAGGACAATATAAAATCTTTCTGCATATTTGTTTCCTCTAGTTATTTAATAGATTATTTTAAATTATTTAGAATGAGAACTAACAGCCAGCTCACCCAGTTCTACAAGGAGCCAAAGTATTTGGAGCAGCAGCAGGCTGTTCCCAGCCGTCTGGACTGTCACACCTGTGTGACCTGAGTTGCTCACACCTCTGCGGCTCTCCCTATGGTTTGAGGAGGATCAAAGATGGCCTGTCCAGGCTTATGATCCTACCATCTGAAACTGTGGCCCATCAACTTTCTTTTCCATTGAAGTGTACAGAATGGGGGGAACTTGGCGCTTTTGCCCACAAAGGGATCTTTAGAATGTGTTTCTTAACCTCTTAGGGAAAAAGCAACACGGTTGCTGGTCTGATTGCTGGATTTCTTGTAGAGCACAGGCAACTGGCTCACCCCTTCCCCTCCCGCTCCTCTTCTGTAACCCCTTCTTTTTCTCCCTTAGCACTCATGACTAGTGTACAGCACAATGCCCCGCGGAAGAGGTATGTTCATGCAGGAAGACTTGGGGAAGTGCTGCATCTGCTGATTCCAGCTTTAATGGTGATGGTGGGCATATGGCTGCAGCAAACGTGGGTGATTCTGATGCAATAAAACCTCCTTGCCAATCAGACATCCCTGCAGAGCTCTGACCTCTCCCGCTCCAGTAGACAACATTCCTCCGTGTGGCTCAGCTTTGACTCGAATGTCAAATGTCACTGGAGCCCAGTGATGCTATGAGCAGATTCCAAGTCGAGATCCAGGCATGGGTTTGGGTTGCTGATCCTGGGAATTCCAATATCGGGAAATATAGCCCAGCATCGGATCAACTGCCCCAGCTCTGAGATTATCCCAGCTTTCATTCCTGCCTTTACTGGTCTCAGCTCTGGCAGCCACACTCAGAGGAACGTTAGAAGATATAAGTGAGATGCATGCTTCTAATCTCTCCACATCAGAAGCGCTTGGAAAGTGTAGTGGAGAGGTGCTGAAAGCCACCACCCAAGTAGTCTGTCTCCCAGACAAATGTCCTTGTACACAAGTCTTTACAGTAGAGTACTTAAAGATTCTACCTGCCAAAGGGATCTTTGAAAATAGAGATAATATTCTGTTATGTTAAAAAGGGTCTCCAAAGGTGACATAATTTCCTGTTTAATTGATTTGCCTTATAAATAAAATTCAGAAAAATGTAAGCCACAGAGCTTTTATTTGAGTCTGATGAGCAGACTCATGATGTAGTCCTGGCCAGCCTGGAACTCACTATCTAGCCTAGGCTAGCACTGGGCTCACAGAGAGCTGCCTGCCTCTGCCTCAGCGCTGGGATTAAGGATGTGTGCCCCACACCTGCTGCCATAGAGACTTTTGAGTTTGAGACTTAGAGAAAAGTCTTAATTGTTCCACACACAAAAATTGTGTATTATAAATGTGAGCGGGAAAGTGTTTTGAGTATATTTATTTACACTTATATTTATTATTATTTCATAAAACTACTGGAAAGGTCAGAAAAGCTAAAAAAAATAAGTTAAAAAAATGTCATTACTTCTACACTTTTTACAATAGGAATGAAACTATTGTATTAGGCTACTCCTGTAGATAAAGTTTTAATTTTTTTCTCCCATTATTGCTTTATGTTCTTTTCTTTGGTCAGTCTTCACACTGTGATTTTCAGAAATATAGACAATTATTTTAGACACTATTTGAAATCTGTTATTTTCTTCTGCAGTACAAATATATGATTACAATTAACTCTGCTATACTTAAAGGTCACTTTGATTTGCTTTTCTTAGCAGTATTAAAAGTATTATCTTCTATATGTGTCCTGTATAAGTTAACTTCTTTCTAATTATATACTCTATAGAAATTTAGTATTTATTGAATGTATTTGCATGGTGTTATACTAGTTTGTTTTTCTCTCATAG
Seq C2 exon
CTTCTCGGACCTGTATTCAGAGTGAACTTCATCGGGACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082:ENSMUST00000182666:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types