HsaINT1041462 @ hg38
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151179355-151187463:-
Coord C1 exon
chr4:151187423-151187463
Coord A exon
chr4:151179398-151187422
Coord C2 exon
chr4:151179355-151179397
Length
8025 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GTTTATTCCTTCTTCAACAGCTT
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCAAGGACCCTTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq A exon
GTAAGTTTGTTTTTTCCTTCTCTGTATTTTCCTCTGTAATAATTTTAAGTGATGATTTAGATTTCCAGCAGGTGATTGTATTTGACGAATCTACAAAGAACCCAAGAGTAGCTTCTCCTAAGAGGTATTAAAGCATTTCAGACAAACAGCTACTTTTCAGCCTATATTTATTGATAAGCCGGTTTCTCAGAACTGTGTTTTTCTCTTGCAGAACAAAGCTGGGGTTTTTTTTCCTTAATCCCAAATGTGATACTATAAAGCTGTTTGTTTTTTTTTTTTAATTTGCCTCTCTAGTTAGTTTCTGTGATCTAATATAAATTTTATGTAGCGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCTGACTCTACTAAAAATACCAAAAATTAGCCGGGCGTAGTGGCAGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAATTATGTAACCATTTTCTAGAGTTAGAGATATCTAACAGGTTTAAGAAATATTAAGTCCTGGCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTTTTGGGGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCCAAGACCAGCCCAACCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAGAAAAGAAAAAAGAAGTATTAAATCCTGTTCCTTTTGGTTCATTTGTTTCTACAGGTACTTTTCACAATATATTTTTTAACTGTATAAGTGCCTATAAAGACGGGCTTATACTACCATATCAAGATAGAAGTGCTAAGAGTAGAATTCCCATCAGAAAGGAACATTTCTATTTTCTGTCCTTATCTCTTGGTCAAAACTTCAAAACTTGCTATTAGTGTGGTATTTTAACACTTTTTTAAATAAAAGGCTCTGGAAAGATCTCTTTAAAAATAGAACATGGATTGCCTGTGTTAGAAAAGGATAAAGATAGGATTTTAGATGTTCTTTGCATTATCTGAGCTGAGGTTACCACCCCGAGGAGAATGTGCCCTATTTTTAGAAACATAACTTGGTTGTTTTTCCCCCCCGATACATGGTCTCTCACTGTCGCCCAGGCTGGACTGCAGTGGCGCGATCTTGTCTCGTTGCTACCTCCACCTCCTAGGCTCAAGCAATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCACATTGGTCAGGCTGGTCTCCTGACCTCAAGTGATTTGCCCGCCTTGGTCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCATGCCCATTATGAATTTAGGATATTCACAGGTCATGAAGAATATGCATTTGAACAATTCCAGTGAAAATTTTACAAGCTGACAATACAGAAAAATATGCCATGTTTCCCCACTCCATTTTTTTTCTTTATTGGTGAACTATAAATATGTGGGAATGCTATGGTATGAGATGAAGAGAATTCAGATATAAAAATGAAAACTTCTTGATAGCCTTTCATGCCTTATAACCCTTGGGTTGTGGGTGGCAGGCGATGACGGGCAGAGAGATAATTTAAATACAAAATTAGGATCTAGAACTTAGGCAAGAATTTATTGGCTGGAGATATAACTTAGAGTAATCACTGTTATAAGCAAAATCCTGGAAGTAGCCAAACATGTAGGGAGAAAGTACACAGGATAGGAAAGATGAGAAGGGATAGAATCTTGGAGACGCTGACGTCTGAGGACAAGCTATGCCTTCAAGAGGCATAAGGCAAAAATGCATGACCCAATGAACCCAGCCCTGCTGTGAAAGGCCTCCTTTCACTGAGTCATATCTGTGGGCTCCTGCACTTTGTTCCCTGGCTTCTTGCCTTAATTCCCTTGGATTTCAGGACTTTTTTGTTAGGGAATCACAATCTGTGCCTGACTTCCCATGGATCCCCCAAGATAGATCTTGCTCAGCGAAGACATGGGCAATAAAAGCTTAAAAGGAATGGTCAGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGACACAGCTGTGTTTTAGAGGTCAAAGGAGAAGATTTTAAAAGGAACAGGTGAATCACCAATAGCTCTTAATACTAAACCAGGCCAAGCAAAAGGTGCTGAGAACAGGTTATTGTGTCTGGCACTTAGGAGGTCAATTGAGACCCACGAGAGAGCAGTTTCAGTAAATATTGAAGTTGGAAGCCACACTTCAATTTCAACAATGAATAGAATATGTGGAAGTTGGGGCGGCTAGGGTAGCCTACTCTTCTATGAAATTTGGTGGTGAACAGGAGAGATATGGACTGTAATTTGAGAAGGAGGCAGAGTTAAGGAAAGAGGAGATCTGACTATGCTTAGGATGAGGAAGCATGAAGACATTTGTAGGCAGCAGGGAAGCAATCAGTGGAGGGATCAGACTGGAGCCATGAAAGAAGAGAAAACGGTGAAACAGGGCCCTAGCAGAGAGAGGAAGGAGGATATGAAACAAAGGGAAAAACCTTGCTTTGAGGTAGCTGGTGTTTTTTTGGTTTTTAACTCAGTTGTCTTTTAATTCTTCTGTCAGTCGCTTTGTAAACACTAAAGAAATACTTGTATTCCTGATGTTTAGGCAAGAAGGCCAAACAGATCCTTTCATGATAACATATAAATACAGAATGAGTAACAATTGTGCCATTCCCTTTTGTTTTCTTCTTTTTGCCTATTCTATAAGAAAAAGCTGTAAATAATTTTTATCTTAGCCAGCCCATTAAAATGTGTGTGTTACTATCCCATACTCAGTCATCTAACCCTGGCAAGCGGAAAGACTTTATCCCATTGTTAAAGTGATATTCTTTAACTGGTTGTAGTTCAACTTATTTCATAATGATTCCGGTTCCAGTCAAGCCTTGGGGTCCTTTTCTTTGCATGTATTCTTGTGAATCCTGAGTATTTTTGGTAAAGTGTTTTGATGTATCCTAATTGGATACATCTAGAATTTTATGTTCTTCCTTTCATTAACTTTTTAAGAGAAAATTATTTTCTGAAATTCAGACTTAGTTAATATTGTTTACCTACCATGAGTCAGGAACTGTTTCCATACATTATAAAATAACACTGTGCGTGGTAGGTGTTGACCCATTTTACATGTGGTAGTGAAACTGAGTCCCAGAAAGGTTAAGTGGCTTCACAAGGTAGAGCCAAGATATGAACCTTGTTTCCTGACTTCAAGGCCATTGAGCTTTCCACTCCACAGACGTTCTTGTTATCATGTCAAATGCATCTAACTCTTATACCCTGTCCCAAACAAATGTAGTCAGTAAGTTTCTTATATTATTGTGATTTTCATTGATCTTTCATTCTTAGTTCATTGATCATTCATTCATAGTTCTATAGCAAGGGTATTTATAATTAATAATCCTTCTATGTGTTTATTTCTTCTGACATCATTTTATTGATAATTTTGAATTATTTAGATCAAGACTAGCTAGCATCCCACTCTCCTGGCTCCACACAGAGTTAAACTGCTTCAAGAAACAAACTGCTCCTAGCCTTGCTCCTAAAGGGCTGTTGGACCTGGGGTAATTCATTTAACCCCTCTGTATCTCAGTCTTCTCCTCTGTGAAGTTTGAGTAGGACGATCGCTGAGGGTCTTTCCAGGCTTGTGATCCTGCTGGAATTCGAGAAGATTCTTTATTGGTGGTAATACTGCACATCTACATCTCAACTTTAACATGAATATGTTTTGTATTTAGAATTTAACCACTTGAACTCGAAAAGTTTGAAAATAGGCCAGGCACTGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCAGGAATTCGACACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAACCCGGCGCAGTGGTGGGCACCTGTAATCCCAGCTACTAGGAAGGATGAGGCAGGAGAATCGCTTGAACCTGGAAGGCAGAGGTTCCAGTGAGCCAAGGTCGTGCCACTGCACTCCAGCCTGGGCGACAGAGAGAGACCCCAGCTCAAAAAGAAAAAAAAAAAGAAAAAGTTTGAAAATAATTCTGTAAAATGATAGGATAACTCTAACTGAAAATACTGCCTTTATTCTGTGGCATTAACCCAAAACGTACCAGACTAGCAGCTTGTGGCAGAGAGGTAAAATGGGACATGCTTGTCTATATGGCAATCTGGCAAATTCGATTTTCCTGGCAACTACAGCAAATTTGTTTAATCTGGGAAAGTGAGAATGAAATGTATAAGCAGATAGTTGAGAAATTAGCACAAAGAGCATGAGACAACACATGAAAATCTGCAGTGAAAACCAAAAGTGTTTGTAGCTATTAATCTTGTTCAGCACTGACAGAAGGTGTCAGTTTTTCCAGAAGGATCAAGAGAGAAAAGAAAGATTTCATAGATAAGTGAATGTGAAAAAAGCCAGACAAGGAGAGGGGAAAGCAGTGATTCTTGAAGGTTGTGCAGAAGGACATCTGTACGTACGACTGCAAGACCCCTCCATGTTCTTCAGCGGCAGTGCCACTCTGCTGCCTGGGGGCCTGCTGTGAATGACCTCTGGTGTGAACGGGCAGAATCAAGTTAAAATTGCTGATTTTAAACAATGTAGATCGACTACTGAATTACCTTTTAAGTACTATTCATACTTTAAAATCAATGCTTATTGAAGTAGCAAATTGATTTTGCAAAATAGTTTTTAGATTTTTTAAAACCGTTGTTAAAAACTGCAGACAGGCCAGGCATAGTGGCTCATGCCTGTAATCCTAGCACTTTAGGAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAAGTCGAGACCAGTCTGGGCAGCATAGCAAAACCCCGTTTCTACAAAAGATACGAAAAGGAGCCAGGTGTGGTCGTGCATGCCTGTAGTCCCAGCTACTCAGGGGGCTGAGGCAGGAAGATCGCTTGAGCCAGGGAAGTCGAGGCTGCAGTGAGCCAATATTGTGCCACCGCACTCCAGCCTGGGTGACAGAGCAAGACCTTGTCTCAAAAAAATAAAAAAAAAAAAACCCTACAAGCGGGTTTTTCAACTGGTTATGTGTGTGGATATCCTGGTCTGCACAGACAAATCTTTGCGGCAGTATTTCTTTACTCTCTGAATCTGTGGATCATCAACTTTGCTTTTCCATTTAAGTGTGCATAGCAGGGAAAAACAGTGGTATGGCAAGACAGTCATGCTCCTGAATTCCTTTTAAAGCTTAGGCAACTAGGTTCACTCTTTTCTCTTCCTTTCCTCTTCTATAACCCCTTCTTTTTTTCCCTTAGCACTCATGAATAGTACACAGCAAAAATGCCCCGTGGAAGAGGTATGTTTGTGATGATAACATGAAGTCTTTTAAAAGTGTTATCCCTGCTGATTTCAGCATTAGTGATGGTGGTGATGTGATTGTAGCAAACTTGAATGGGCCTCTGACTTAATGAAACCATTCTTACAAATCAGACACACCATGCAGAGCTCTAGCCTCCCTGTCAGCTTGGTTTAGCTCTTGATAAAAATGTTAATAGTCAGTCAAACCAGTTGATGATATGAATATGAGGACATCCTCCAAGTAGAAACCCAGGGGTTTGGTTTCAGATCTTAGAGGTTTGCTTTGCCAACCCAGCAGAGGTTCACCTGTTACGGCTCCAATCCAGCCTAAACTTCATTCCCACCTTCCACTTCCACCCCTGCCTCCCCTAGTTTTGACAGCCTCCTTGTTCAGAGAGAAGCAGAAGTTAATAGGGGGGAAAGATCTATGCTTCCAATCTTTTCAAATAGGAAGAATTGAACAAGTTGAGTATTACTGAGATATGAAAGCAACTGGTTAAAATAGTTTATATCTGAAACAAATTTCCTTTGTGCACAGATCTTTACACTATAGTATTAGAAGATTTTTTTCCCCAAAGAGATCTTTAGAATATGTTCCATGAAAAATAGAGGTAGGCCGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGAGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCAGGCACCTGTACTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCCATCTCAGAAAAAAAAAAGAAATAAAGAAAAATAGAGGTAATAGTCTCTATTACATAAAAATTGAAAAATTGACCCCATATGTGTCGGGCGCAGTGGCTCACACCTGTAAAGCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGGTCGGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTATCTACTAAAAATATAAAAAATTAGCCAGGCATGGTCGCGGGCGCCTGTAGTCCCAGCTACTCTGGAAGATGAGGCAAGAGAATGGTGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAGAAAAAAAAATGACCCCATATGTGATATGTTCTAGATTATCCGATTAAAACTTAGTTTACTTTATAAAATAAAATTTGGGAAAAAATTTAAACTATCAAGCTTAAGGACTTGAGTTTGAGACTTAAGGAAAAAGTCAGTGCTGCATATACAATAATATGTGCTATAAACAAGTTTATAAAAGTGATTTGAACACCTTTTACATTAATTATTATATCTTAGTTTAAGTAATAAAAGGCTGGGCATAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGAGGATCGCTTGAACCCAGGAGCTTGAGACCAGCAACATGGCGAAACCTCATCTCTGCGAAACATACAAAAAATTACCAAGGCATGGTGTCATGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCTGGGAACTTGAGGCTGCATTGAGCCCTGAACATCATGTCACTGCTCTCCAGCCTGAGCAACAGGGTGAGACCCTGTCTCAAAATAAATAATAAAACAACTTAAAGGTTATAAAATGTCAGATAAGTTAGACAAAAGATGAAAATTTGACCAGTTTCATTCTACAATAGATTTATAAACAAACATCACAAAAGCATAGTCATATAGATTGGAATCGATATTTAAAATTTTTTCTGCCCATTGTTACTTCATGTCATCATCTTAATACTCCAGCCATGCAATTTATATTTAATAGCTGTCTTCTTTTCTCTGTTCATTCTTCAAACTATTTTCACAACTACAGAATGTTCTTTGGGGAGTTTTTGAAATCTATGTATTATGCAATCTCTAATATATAACCATAATTAACTTTATGCTAATAAAATGATTGTTTTGATTTACTTTTTTTTAAGGATATTAAAATTCATACATTCTATATGATGTCAAGTATAAGCTTTTTCCAATTGTGTACTTTGTAAAAATTTAAACCCTTACCAAACATACTAATTTTGTACTATACCAGTTTATTCCTTCTTCAACAG
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686:ENST00000409598:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains