HsaINT0151743 @ hg38
Intron Retention
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6440064-6444301:-
Coord C1 exon
chr19:6444151-6444301
Coord A exon
chr19:6442160-6444150
Coord C2 exon
chr19:6440064-6442159
Length
1991 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCCCCCCGCCCCCTCCCAGCCT
3' ss Score
7.04
Exon sequences
Seq C1 exon
ACTCTGAAGAACTGGTGGCTTCAGCAGTACAGCCACGACTCGGCAGACCCAGGCATCCTCGTGCTCCTGGCCTGCGGTACCATATCCAGCACCTGCGGCCAGATAGCCAGTTACCCGCTGGCCCTGGTCCGGACCCGCATGCAGGCACAAG
Seq A exon
GTGAGGCCTGGGCGGGAGGATGGGGCAGGGGGAGTCTCATCGCTTGGGCCCCAGCTTCTCCCAAGTAGAGCCCTGGGCTGGGACCCTCCTGGATTTCGATGGGCTTCTCTGGGCCTCCGTTTCCCCATTTGTGACATTGAAATGGGAGTCCTTTACTTTCATGGAGCTGAGGATTAACTAGGATAACAGGTGCAGTGGGTACAGGAAGAGATCCCTTGCAGACTTAGCTGGGATGTCGTTGCTGGCAAATGTCTAGCATTTCCAGGCTGGTAACTTGAACTCTTAATTTGTAAGCCTGGGTTATCGTGAGCGGGAGGCTAGGAACAGGGGTAGGGAGCAGTCAGGGCCAGAGTGGTTATTGTTTTTGTCTGTATTTTTCTTTTATGAATTATTTCCCCCCGTCCCCTCCACCACTACCCTCCCATTCTCCCTGAATCTGTTTTGAGAATTTTCTTGAGAATTTTAGTGTTTGTGTTTTGTGATTTTCACTGGAGATGTGTCAGTGTACAAGACGGACACGGTCCCCACCCTCATAGAGCTCACAGGCCGGAGAGGAAGGAAGATGCTAAATAAATCATTCTGGAATTAAGTATTGATTTAGGGTTGTATAAAGGGGAGAAGGAGGCCGGGCACAGTGGCTCACATCTGTAATCCCAGCACTTTAGGAGGCCAAAGAGGAAGGATCATTTGAGTCCAGGAGTTTGAGACCAGCCCGGGCAACATAGCAAGACCCCATCTTTTTTTAAAAAATGAAGAAATAAATTAGCCAGGCGTGGTGGCAGGTGCCTGTAGTCCAAACTACTTGGGAGGCTGAGGCCGGAGGATCACTTGAGGCTGCAGTGAGCTATGATTATGCCACCACACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAAAGTGGGTGGGAGCCAGGGGTAGTGGCTCACGCCTGCCATCCCAGCACCTTGGGAGGCCTAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGACCAACATGGCTAAATCCTGTCTCTACTGAAAATACAAAAATTAGCCGGGTGTGATAGCAGGCGCCTGTAATCTTAGCTACTCGAGAGGCTGAGGCAGGAGAATCACTTGAACCCAGCAGGCATAGGTTGCAGTAAGCCAAGTTCGTGCCATCGCACTCCAGCCTGGGCAACAGGAGTGAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGGGCTGGGCATGGTGGCACACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCTGAGGTTAAGAGTTCAAGGGCCGGGTGTGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGATGGATCACCTGAGGTTGGGAGTTGGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTATAAATACAAAAAAATTAGCCGGGCAAGGTGGCGCATGCCTGTAATCCCGGCTACTTGGCAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTAAAAAACAAAAAGTGGGTGGAGGGCAGGGAGGAGCCTGACTTAGACTGGAGCACCAAGGAGGAGTCCCCTGGGGAGCTGGCTCTGGGATAGGGGTTGGGAATATGAGTAGGAGTCAGCTGGGAAAGGAGGGAGGGAACCTGGCTCCAGGAGGAGGACATTTCTGTCCTTTCTCACCTTGCACACCCATACCTGCTCCATTTCTAATTGTCCCCAAACTTGGGGCGAAAAGGTGAGCAGCCAGTTCCAAGGTCAATACAAGTCTCGACTCTGAGTGGTAGGTCCCACTGTTAGTCTAACCTCCTTCCCTCCTGCTGCAATGACACCACCTGGCCCAACCCTGGGGGTAGGAGGGGGAAGTGAAAGGGGAACGTTGGCCTTACCTGGTGCCCCCCCCGCCCCCTCCCAG
Seq C2 exon
CCTCCATCGAGGGTGGCCCCCAGCTGTCCATGCTGGGTCTGCTACGTCACATCCTGTCCCAGGAGGGCATGCGGGGCCTCTACCGGGGGATCGCCCCCAACTTCATGAAGGTTATTCCAGCTGTGAGCATCTCCTATGTGGTCTACGAGAACATGAAGCAGGCCTTGGGGGTCACGTCCAGGTGAGGGACCCGGAGCCCGTCCCCCCAATCCCTCACCCCCCACACCTCAGCCACTGGAGACTGATGATCCAACCACAGGATCCCTACTCTTTGGCCACGAGATCCCAGTACCCAGATCCTGGATCCTAGACTCCTATGCCCCAACCATTGGGTCATGGGATCCCAGCATCCAGATCCTGGATCCTAGACTCCTATGCCCCAACCACTGGGTCATGCGATCCCCACCCTTCAGCCACTAGATCCCAGATCCCCCTGTAACCATAACTGTGGATCCCTTACTTCAGCAACTCAAGTCTGCTACCCTAACCACAAGATTCAAGATTATCCACACCCCAGCCCTTAATCCCCATCCCCCAAATCACTGGATCCTGCAGCCCCACATCCTAAGGTGGATCCCACGCTTCCCTGTGCCCCCTACTGGATCCTGGACCTCTACGTCTTAACCACTGGATCCCACACAAATCAGTGAATGGATCCCAACACCCCAACCACAGGAGCACGGATTCCCTGTACCTCAACACCCAGACCCTGCCTCCCTCAGGCACCAGATCCAGTGTCCTAGTGAAACGCTGGATCCTAGATCCCCAACCCCAGATCCCCATGCCTCGAGCCCTGGATCTCCAAGCTCAGCTGCTGGATTCTGGATGTCAACAAACCTCACCACTGGATCCTGACAACCACAATGCCTGGATCCTGGGGCCCCCATCACTGGATCCCAGATCCCCTCACTCCACCCACTGGATTCCTGCATTGGTTTTTGGTTTTTTGTTTTTTTTTAACCTCGACACTGGGTCTCAGATCCTTCTGCTGACTGCCAGATCCCTGCATTTCAAGCACTACGCCTTCCACCCCCAGGCACTGGATCCCAGATTCCCAAGCCTTCACCCACCAGATTCTGGCTCCTAAAACAAGTGCGGGGGCCCCAGTGGCACAGCAAGTGGATCCTGGCAACTGCAGCTGCTGGATTCCAGATTCTGGGTCCCCAATCCCTCTGCCCAGTCCCTCAATGTTGAAACCTCATCTCTTGAAGGCAGATCCTGATATTCCAAGGCACTGAATCCCAAGCCCTGAATCCCCGGTTTCTGATCTGAATCTTCCAGGCGCCGGGTCCCAAATGTTCAGGCCCCAAGTCTAGATCCTGGCAGCCCAGTCACAGAGTATCCCACACACACTGGTGCCCAGAGCCGGCTTCTCATGACATGAAATTGCATGGTCGAGGGAGTCTGTGGGGAAGGAAGCCCAGGTCCTGGCTGCAACCTGCACGGATGCTGGATTCCCCCTCACCCCACCTCTGCATGGCCACCCCCTCCCAGCCCTGTGGGGAAACTGTTCCCTGGAACCACTCCACTCCCTGCATCCCCACACTTCACAGCATCTTCCATCCCCCTCCCACCTTCTAGGCGAATAGTCCCCAGAGCTGTGTTCCTCCAAGGGGTCCGAGGAATCACTCACTCCTGGAGGCTGGCAAGGAGACAGTCTGAGGCCAGGGACACATGAAGGGATGTCCCCACCCCAGCACTATCAGGGCCTCCCCAGGCTTCCAGAGTTGAAAGCCAGGAGAAAATCGGCAAAGACCACCCTTCCCTAAACCCAAGCACCCAATGATGCAAAAAACAAAAACAAAAAAAAACCACCAAATCCCCAAATTCATTCCAGATCTATTTTTCTACCAGAGAGAGGAGCAAAGTCCTCCTCCCCTGCGCCCTTACATTCTGCACTTCATAGTTGGATTCTGAGCTTAGGATCATCTGGAGACCCCATGGAGGGACTTGGAAAGGGGAACTGGGATTTGGGGAGGGGCTGGAGGACTTCCGCACGCTTCCACCTCCTTCGACCTCCACTGCGCCCCACCTCCCTGCCTGTGTGTGTTATTTCAAAGGAAAAGAACAAAAGGAATAAATTTTCTAAGCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648:ENST00000301454:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(10.8=19.6),PF0015322=Mito_carr=PU(36.5=68.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCATATCCAGCACCTGC
R:
TCGTGGCCAAAGAGTAGGGAT
Band lengths:
357-2348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains