MmuINT0145571 @ mm10
Intron Retention
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57043711-57047336:-
Coord C1 exon
chr17:57047186-57047336
Coord A exon
chr17:57045664-57047185
Coord C2 exon
chr17:57043711-57045663
Length
1522 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGGCTTCCAACCACCTCCAGCCT
3' ss Score
3.28
Exon sequences
Seq C1 exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCCGCTAACCCAGGCATTCTCGTGCTCCTAGGCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
Seq A exon
GTGAGAAGTGTGGGCAGGAGGCTGGGGTAGGAAAGCCAGCCACTTGGGTTCCACCTGCTCCCACGTAACTGTGTAGGAAGAACCAGGATCCTTGTGAGTTTGGGTGGCCTTCATAAACCCTTCCTCTTGTCTGGGCTTCTGTTTACCCATCAGTGACCCTGAAGAAGGAGGCTTTTACCTTATCGGCCTGAGAGTTCAGTGGTGTCAAAAGTACAGGGAAGTACCACAGACAACATTGTGGCACTTCTGGGCCTGCCAGTAACTTGAGCTGTTATTCAAAACTGAGAGAAAAAAAGGGAGTGGAGGTTGCTTAGAACAACATTAGCCAAGGTCAAGGAAGGACAGTTTGCTGGGTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTGTTTATTTATTTTGTGAGACAGGGTCTCACTATGTACCCCTGACTGGCTGGAACTCACTATGTAGCCTAGGCTGGCCTTGATCAGAAAGATCTCCCAAATGCTTGGGTTAGAGGCATGGCCAGCAGACCTGGCCATATTATCATTGTTTTTAGGCAAGATCTCACTGTGTGGCCCTGTCTGGCCTGGAATTCACAGAGATCCCTCATTCCTGGGGATGAGGACAAAGGCAACATAAGTCATTCCATGATCAGATGTGATTTAGAAGAGGTAGGAACCCAGCTTAGATTAGGTACCACAGAGGGCTCCTCCAAACAGCCAGCTTTGGGATGGAGAATGGAAGGAAAAGTAGACACTAACCCTGAAGAGAAGGAGAGAATTAACTTTAAGGATGGGGGTATTTCTCACCTCTTGTCACACACAGACACTCATGTATTCACACATGCACTCTTACATACAGACACATGTATGTATTCTTATACACAGAAACACATATGCACTTACACACACAGACATGCACTCACACATGAACATATGAACTTTCACACATGCATATGCACACACAAAGACACACTGCACACTCATACATGCACACATACATTTATGCACCCTCTCTCTCTCTCTCACACTCACTCTCATATAGTTGTACATATGTACTCTTATACACAAACACACATATGCAGTCTCACACATACTAACAGACACACTCTCACACATGTACACGCAAGTCACAGATATGCACTCTCACACATGCACACACAGACACATATATATATGCACTCTCACAATGCATACACACAGGCACACATGCACTCCCACACATGTACACACAAACTTTCACAGTACATATGCGCATACACAGACAAATATACACAGACTCATGTACATGTTCTCATGCATGTATATACCTGGTGTTTCCATTCATCCCCAAATGTAGTCCCTAAGATTGACAGTTCCTAAGCCCACAGACACCCTGAGTCTTGTGGTAGGTCCCACTGTTCCTCTGTCTTACCCTTCTGCCTTCTGTTTAAATGGCCGCCTAGCTCAGCCCTAGGATGAGGTAGGAGGGAGAAATGAGATGGGGAAGCTTTGGTCTTACCAGGCTTCCAACCACCTCCAG
Seq C2 exon
CCTCCATTGAGGGTGGCCCGCAGGTCTCCATGGTGGGTCTACTTCGACACATCCTGTCCCAGGAGGGTGTATGGGGCCTCTACCGGGGCATTGCCCCCAACTTCATGAAGGTCATTCCAGCCGTGAGCATCTCCTACGTGGTCTACGAGAACATGAAGCAGGCTCTGGGGGTCACATCCAGGTGAGGGACAGGGAGCCTGTCCCCCTAAAACTCCCTCATCTTCATCATGGTATCCCCTACGCTGATATCTTCAACCACAGAGACTGATGGCCTGACCAGTGGATCCTAACCCCACACCCCAAGGCACTGGACCCCAGTACCCAAATCCCCGATCCTAGCCCTGTGTCCTGACCATGGTACCACTGCACCCCACACTTGAGCCACAGGATCCCAGGACTTGATCCCCAACTTCACAACCAGACCTCGAAGCCCCAACCACTGGACCCCACATATCAGCAGCCTGACACTTGATATGTAAAACTATCCATACCCTGGCCCCAAACCCTTCTTCCCAAGCACCTTGACCCTGTCATCTACACCCCAAAGCTGGACCCTGCTTTTCCCTGCCCCACTGGTTGCTAGACCTCACTATGCAGCAGCAGGTGACCCCAATGCCCCAAGCATGGGAACACTCATCCATGTACCCCATAGCCCAGCTCTCAGAGCCCTCAGGCACCAGACCCAGTGCCCTAATGCCACACTGGACCAGAGATCCCTAAACTTGCTGCTGAGTTCCCTGTAACCTGCCTCACAGCCCAGCCCCTGGATTCTAGGAGCCAAGAACTCTCAGCCACAGGGTCCTGACACAGCAAAGCCAAGATCCTGGGCTCTGCCACTGGGTCCCTGGATCCCTGGATTACAGGTCCCTTAACCCAACCAATGCATTTTCCTCTGTTTGAGGTTCCATATTCCCCCATTTTTACTGCTAGGTCTACATTCCAAGCACCACCCTCAATCTCTCACCACTGGACCCCAAGTCCCAATCCACTGGATTCTGTCTCCTGGAAGCATGGGTGCGAGAGCTCCAGGGTCCCTCATGTGGATCCCACATGCCCCAGCTGCTAAATTCCAGATCCCAGATTCCTTCAACCCCTTCTCTGGACCACATTCATAGAAGGCCAAACTTCCAAACACCTTCATACTCCAAGGTCTTTGCTCCTATACCCCAAATGTCACTCCCCAAGTCTAGATCCCAATAGCCCAGTGACAGCATCTCATATCCCAGACACACCCTGGAGCTGATTCCCAATGCATGGAAGCATGCCATCCAAAGAGTCTTCTAGAAGCTCAAGACGCCAGACCAGTGGCTCCCTACCAGGCAGTAAGGAATGGGACATATGAATGCTGCATTGCACCTCAGCTAGGACACACCTCCCTTCCCACCCCCACCCCCAAATCACTTTGTTCCCCGTCCCCCTCTCTCTGCAATGTCTTCCACATTCCCCTGCCTTCCTTCCAGGCTAGTAACTCCCAGATCCCAGGTCCCTCTGGGAGGGCTGAATCTGCTTGTTCATGGGTTGGGAGCTACCAGGGGAAGTCAGGGACACCACCAAGGGGACCACCTGCCTCTCACACTGCCAGTCCTGCTCAGGCCTCAGAAAGTTGCAATCAAGGACCAACACACAACATCCTTCATGAAACCCAGCATCCAGTATGCAAATTAAGTATCCCCAAGCTGACTCGGAGTCTATTTTTCTACCAGAGAACAAAGTCCCCTGGCTCCCACCACATTCCCATACCCTCCACACTTCAAGATTGGATTCTGAGCTTAGACCTGGGGTACCCCGCTCCACCTCTCAGTCTTTAGGGGGACCTCATCAAGGGACTGAGAGGAAAACTGGGATGTTGGGGGGGCATGGTTTCCACCTCTCCCTCCAACCTACACCAAGTCCTACCTCCCTGCCCATGTGTGTCATTTCAAGGAAAAAAAGAATAAATTTTCTAAGCTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329:ENSMUST00000040280:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(17.2=19.6),PF0015322=Mito_carr=PU(62.5=68.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATTGCCAGTTACCCTC
R:
GGGGTTAGGATCCACTGGTCA
Band lengths:
348-1870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types