RnoINT0136919 @ rn6
Intron Retention
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9999278-10001962:+
Coord C1 exon
chr9:9999278-9999428
Coord A exon
chr9:9999429-10001777
Coord C2 exon
chr9:10001778-10001962
Length
2349 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGGCTTCCAACCACCTACAGCCT
3' ss Score
5.88
Exon sequences
Seq C1 exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCAGCTAACCCAGGCATTCTTGTGCTCCTGGCCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
Seq A exon
GTGAGAAGTCTGGGGTAGGAAAACTTGGGTTCCACTTGGGTTCCACCTGCTCTCACAGAACTCTGTGTAGGTAGAGTCCTGAGCCAGGATCCTTGTGGGTTTGGGTGGCCTTCATAAACCCTTCATCTTGTCTGGACTTCAGTTTACCCATCAGTGAGCCTAAAGGAGGAGGCTTTTACTTTAAAGGTCTGAGAGTTCAATGACATCAAAAGTACAGGGAAGTACCACAGACAACATTGTGGCATTTCTGGGCCTGCCAGTAACTTGAGCTGTTATTCAAAACAGAAAATAAGGGAGTGGGGGTTGCTAGGAACATTAGCCAAGGTCAAGAAGGACAGTTTGCTGGGTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTATTTTATGAGACAGGGTCTCCGTGTGTGGCCCTGTCTGGCCTGGATCACAGAGCTCTACACTGGCTCTGTCAGCTGAAGGTGCACCCTGTGCCCAGCCCTAAGGACAGCCTAGTTACTGTGTTTTTTTTTTTTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTGTGTTTTGTTTTGATTTTAAGGTATTTTACATTCTTTAGATTTATTTTTATTTCTACATTTAGATTTATTTTTATTTCTATATAGATTTATTTTTATTTCTACACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGAGAGGGGGGAGGGAGAGGGAGAGGGAGAAGGAAAGACCCACAGAGGCCCATCAGAGACCCTGGAGCTAGAATTACTGAAAATCCCTTGTGTGGCTGCCAGAAACTGAGCTCTGGTCCTCCAGAAGAGCAGGAAGCACTCCTCTGGCTGAGCCATCCCCCAACCCTTGATTTTAGGGGTGTCTGTTTGCTTGTTTGCTTGCTTTTTCCTGCGTATTCTTTTCCCATGAGTTTTTCTCCTGTTCTGTTATCCCTGAATCTGTTTTTGTGAACCTTAGTGTTTGTGTGCTGGATTTTGGCTGGAGAAACTATCAGTGAGTGACTAAATACACTCTCTACCCTCATGTTCATCCCCTGGGGGTGAGGACAAAGTCAACGTAAATCATTCCATGATCAGATGTGATTCAGGGAGAGAGGTAGGAGCCCAACTTAGATTAGGTACCACAGAGGGCTCCTCCACAGCCAGCTCTGGGATGGAGAATGGGAAGATAAGTAGATGCTAACCCTGAAGAAAGGAGGAATTAACTTTAAGGAAAGGCAGATTTCTCACCTCTTGTCACACACAGACACACATATGTATTCATACAGATGCACTCTTACATGCAGACACATGTATGTACTCTTAACACATAAGCACTTACACAGAGACATACTTATGCACTCTCACACATGTACATATGAACTTTCACACGTGCATATGCACACACAAAGACACACCACACACTCATACATGCGCTCATACATTTATGCGCCCTCACACAGAGACACACATAAGCACTCCCATATAGTTGTACATATGCACTCTTATACACAAATACACTATGCAGTCTCACACATACAAACAGACACACTCTCACACATGTCCACACAAATATGCACTTTCACACATGCACACACAGAGACACACATATGCATTTCATATAGTTATACATATGTGCTCTCATACATGTTCATACAAGTCACACATATGCACTCTTACAATGCACATATATGTGTAGTCTCACACATGTACACACAGAGATACACATATATGTACTCTCACAATGCGCACACACAGACACACATGCACTCCCACATATGTACATACAAACTTTTACATGTGCACATGCACACATAGATATGCACACACAGATACACATATGCACTCCCACACATGTACATACAAATTTTCTTTTCTTTTCTTTTCTTTTTTTCTTTTTTCGGAGCTGGGGACCGAACCCAGAGCCTTGTGCTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCTAACATACAAACTTTCAAAGTGCATATCTACACACACAGACAAATATACACAGACTCATGTACATATTCTCACACATGTACATACCTAGTGTTTCCATGCATCCCCAAATGTAACCCCTAAGATTAACAGTTCCTAGACCCACAGACATCCTGAGTTTTGTGGTAGGTCCCACTGTTCCTCTGTCTCACCCTCCTGCCTCCTGTTTAAATGGCCACCTAGTCCAGCCCTAAGGTGAGGCAGGAGGGAGAAATGGGATGGGGAAGCTTTGGTCTTACCTGGCTTCCAACCACCTACAG
Seq C2 exon
CCTCCATTGAGGGTGGCCCGCAGGTCTCCATGGTGGGTCTGCTTCGACACATCCTATCCCAGGAGGGTGTATGGGGCCTCTACCGGGGCATTGCCCCCAACTTCATGAAGGTCATTCCAGCTGTGAGCATCTCCTACGTGGTCTACGAGAACATGAAGCAGGCTCTGGGGGTCACATCCAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781:ENSRNOT00000073000:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]