HsaINT0151763 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128106353-128107179:+
Coord C1 exon
chr9:128106353-128106520
Coord A exon
chr9:128106521-128107028
Coord C2 exon
chr9:128107029-128107179
Length
508 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ATGCTCCCTTCTCCTTCTAGACG
3' ss Score
10.73
Exon sequences
Seq C1 exon
GTCCTGAAGACCCGGATGGCGCTGCGGAAGACAGGCCAGTACTCAGGAATGCTGGACTGCGCCAGGAGGATCCTGGCCAGAGAGGGGGTGGCCGCCTTCTACAAAGGCTATGTCCCCAACATGCTGGGCATCATCCCCTATGCCGGCATCGACCTTGCAGTCTACGAG
Seq A exon
GTGAGGCCCAAGCTGGACAGATTTAGAAACCTCCTCCCAGCACACCTCCACCTGCTGTCTCCCTCCTTGACGGACGCGTGGTTAGTGCAGGAAACTGCATCAAAGACTGCGCCTCCTTCCTGCTCTTCTGTTTACTGCAGCTTTCCTTCACCCTGCCTGCCCCTGGCAGACCCCAGCAGCTCCTGTGAGCCCTGCACCCAGGCTCTGCATCCCCAGAGGCTCAGCAGGCAGATCCCCAGAGCAGGGTGGCCCCCAGGAGCTCACAGGCCCCAGCACACTCTAGACAGACCCCAGAAGTCAGCCCTTCTGTGTGGGGAAGGAGGTGTTCCCTCTACCTTGTCCCGGAATTCCCAGTGACAGCAGAAACAGGGCAGCCAGGCTAGGAGCCCAGCCAGGCCCCAGGCGCGGCAGTCGGGTTCCAGTGGCCTGAGGACCCAGTAACAGCCCCGTCTCTTGCTGCCTCACTAGCCCTTCCTAGGGCTTATCCCATGCTCCCTTCTCCTTCTAG
Seq C2 exon
ACGCTCAAGAATGCCTGGCTGCAGCACTATGCAGTGAACAGCGCGGACCCCGGCGTGTTTGTGCTCCTGGCCTGTGGCACCATGTCCAGTACCTGTGGCCAGCTGGCCAGCTACCCCCTGGCCCTAGTCAGGACCCGGATGCAGGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAGACCCGGATGGC
R:
CTGCATCCGGGTCCTGACTAG
Band lengths:
311-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains