RnoINT0136936 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11444292-11445134:-
Coord C1 exon
chr3:11444967-11445134
Coord A exon
chr3:11444443-11444966
Coord C2 exon
chr3:11444292-11444442
Length
524 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGGATCCCATTTCCCTCTAGACA
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGCCAGTACTCGGGAATGCTGGACTGTGCCAAGAGGATCCTGGCTAAAGAGGGTGTGGCTGCCTTCTATAAAGGCTACATCCCCAACATGCTGGGGATCATCCCGTATGCGGGCATCGATCTAGCTGTCTATGAG
Seq A exon
GTGAGGGCCTGGGAGAGAAAGGGAAGTAAAGCACCACCTAGTCCCAACACCCTCTGTTTTAGAGGTGCTCAGATAAGAGAGGTGGGGTGAGGGGGAGTCAGTTCTTTACTGCAGTGGTCTCCTGTCACCCTCCACCTACTGCATAGCAGGCCCAAACGCTGTCCCAGGTTCTGGACCCTAAAGGGGTTCAGCAGGCAAAACCAAGAACAGTGGCCACTGGGGACTCACATATATCTCTACATACTTGAGAGCACAGAGCCAGGTGCTCTGTGTGGGAACATAGTGCTCCCTCTGCCCTCAATCTGCTTCCTGTCCTAGCCAAGAGCCTCAAGTGACAGTGGATGCCAAAGGCAGGCAAGTCAGGAGTTCTGCAAGGCCCAGGCCAAGTGAGTCAGGTTACTTTGGCTTCTCAGATCCCATGTGATAGGAAACAGCTTTCCTGTGGATTCAGTAGCTGTCCCAGCCCCAGGGTTTCTCCCACACTGCCTCCTTAGAGCTAACTCCTGGATCCCATTTCCCTCTAG
Seq C2 exon
ACATTGAAAAATACCTGGCTACAGCGCTATGCTGTAAACAGTGCAGACCCTGGCGTGTTTGTTCTCCTGGCCTGTGGCACAATCTCCAGTACCTGTGGCCAACTGGCCAGCTACCCACTAGCCCTGGTCAGGACTCGGATGCAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGAAGACCCGAATGGCC
R:
CTTGTGCCTGCATCCGAGTC
Band lengths:
319-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]