MmuINT0145591 @ mm9
Intron Retention
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32271929-32272779:-
Coord C1 exon
chr2:32272612-32272779
Coord A exon
chr2:32272080-32272611
Coord C2 exon
chr2:32271929-32272079
Length
532 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTATCCCATCTCCCTCTAGACA
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCCGGCATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCCCCAACATGCTGGGGATCATCCCCTATGCTGGCATCGACCTAGCTGTCTATGAG
Seq A exon
GTGAGGCCCTCTTGGCAGTAGGGCCTGGGACAGGGAGGGAAATAAAGGACCTGCCTGGTACCAACACCCTGTGAGAGATGCTTAGATGAGAGATAGCAGTTAGCTCTCTTCTGCAGTGGTCTCCTGTCTCTCTACCTTCTGCACAGCAGGCCTGAACTCTGGCCCAGGTTCTTTACCCTCTTAGGGTCCAGAGGTTCAGCAGGCAGACCCAAGAACAGTGGCCACTGGGGGCTCACATATCTCCACAGACTGAGAGTACAGAGCCAGGTGCTCTGTGTGGGAACATAGCGCTCCCTCTACCCTCATTCTGCTTCCTGTCCTAGCCAAGAGCCTCAAGTGACAATGGATGCCAAAGGCAGGCAAGTCAGGAGTTCAGCAAGGCCCAGGCCAAGTGAATCAGGTTACTTTGGCTTCTCAGATCCCACGTGATAGGAAACAGCTTTCCTGTAGATCCAATACCTGCCCCACCCCCCAGTGTGAGTCTCCCACACTGGCTCTTTAAGGCTAACTTCTGTATCCCATCTCCCTCTAG
Seq C2 exon
ACATTGAAAAATACCTGGCTCCAGCGCTACGCAGTAAACAGTGCAGACCCCGGTGTGTTCGTGCTCCTGGCCTGTGGTACTATCTCCAGTACTTGTGGCCAGCTGGCCAGCTACCCACTAGCCCTGGTCAGGACCCGGATGCAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-Slc25a25:NM_001164358:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGAAGACCCGAATGGCC
R:
CTTGTGCCTGCATCCGGG
Band lengths:
319-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: