HsaINT0151874 @ hg19
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6429735-6430172:-
Coord C1 exon
chr19:6430020-6430172
Coord A exon
chr19:6429843-6430019
Coord C2 exon
chr19:6429735-6429842
Length
177 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CCTCCTCTCTCCTCTCCCAGTGC
3' ss Score
11.43
Exon sequences
Seq C1 exon
GTCTACTCCTCCAAGACGAACTTCACCAACCTGCTGGGGGGGCTACAGAGCATGGTCCAGGAGGGCGGCTTCCGCTCCCTGTGGCGGGGCAACGGCATCAACGTGCTCAAGATTGCTCCTGAGTATGCCATCAAGTTCTCCGTATTCGAGCAG
Seq A exon
GTGGGGAATGAGGGGCCTGCTTCCCCCAGCTCAAGCCCAAACCCCTCCCATGCCCCCAAAACTCCAGGCCCTTGTTCAAGCACACACTCACCCTCCAGACCCCAGGCCTCTTCCCTGCGCGGGTTTTGTGTCGGAGGGTGGCTGACTTCTCTCTCACCCTCCTCTCTCCTCTCCCAG
Seq C2 exon
TGCAAGAATTACTTCTGTGGAATACAAGGGTCCCCGCCCTTCCAGGAGCGTCTCCTTGCTGGCTCCCTGGCTGTGGCCATCTCCCAGACCCTCATCAACCCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-SLC25A41:NM_173637:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.8=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(7.5=19.4),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAACTTCACCAACCTGCTG
R:
TCCATGGGGTTGATGAGGGTC
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)