MmuINT0145698 @ mm9
Intron Retention
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57177748-57178105:-
Coord C1 exon
chr17:57177953-57178105
Coord A exon
chr17:57177856-57177952
Coord C2 exon
chr17:57177748-57177855
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACACCCACTCCCCCTGCAGTCT
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTGTACTCCTCCAAGAGCAACTTCAGAAACCTGCTGAGTGGACTGCGGAGCCTGGTCCAGGAGGGCGGCGTCCGCTCCCTCTGGCGGGGCAATGGCATCAACGTGCTCAAGATCGCCCCAGAGTATGCTATCAAGTTCTCTGTCTGTGAGCAG
Seq A exon
GTGAGCCACAGATCAAGCCCCGAGAGTGCAAGACACCCCTCCACCCGTCCCAGATGCACAAGGGCAGGCGATTCTCTCACACCCACTCCCCCTGCAG
Seq C2 exon
TCTAAGAATTTCTTCTACGGTGTGCACTCATCCCAGCTCTTCCAGGAACGGGTCGTCGCAGGCTCCCTGGCTGTGGCCGTCTCCCAGACGCTCATAAACCCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486-Slc25a41:NM_175333:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGCTGAGTGGACTGC
R:
GAAGAGCTGGGATGAGTGCAC
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: