RnoINT0137045 @ rn6
Intron Retention
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10007510-10007878:+
Coord C1 exon
chr9:10007510-10007662
Coord A exon
chr9:10007663-10007770
Coord C2 exon
chr9:10007771-10007878
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACACCCACTCCTCCTGCAGTCC
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTATACTCCTCCAAAAGTAACTTCAGGCACCTGCTGAGTGGCCTGCGGAGCCTGGTCCAGGAGGGCGGTATCCGCTCACTCTGGCGGGGCAATGGTATAAACGTGCTCAAGATCGCCCCGGAGTACGCTATCAAGTTCTCTGTCTTTGAGCAG
Seq A exon
GTGAGCCTGGGTTTTACCACAGATCAAGCCCTGAGAGTGCAAGCCACCCCTCCACCCGCCCCCGACGCACAGTGGCAGGCTATTCTCTCACACCCACTCCTCCTGCAG
Seq C2 exon
TCCAGGAATTTCTTCTACGGTGTGCACACATCCCCGTCCTTCCAGGAACGGGTGGTCGCAGGCTCCCTGGCTGTGGCTATCTCCCAGACACTCATCAATCCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853:ENSRNOT00000074117:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAACTTCAGGCACCTGCTG
R:
TGGGATTGATGAGTGTCTGGGA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]