HsaINT0153489 @ hg19
Intron Retention
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27424644-27427514:-
Coord C1 exon
chr3:27427383-27427514
Coord A exon
chr3:27424742-27427382
Coord C2 exon
chr3:27424644-27424741
Length
2641 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TTCACACATGTGTTATAAAGGAA
3' ss Score
3.85
Exon sequences
Seq C1 exon
GTTCTTGCATTAGTGTTTGTGCGCAAACTCATGGACCTGTGTTTCACGAAGAGAGAACTTAGTTGGCTTGATGATCTTATGCCAGAAAGTAAGAAAAAGAAAGAAGATGACAAAAAGAAAAAAGAGAAAGAG
Seq A exon
GTAAAAAGATAACAATTTTAAACTTACACCACTTCCTTATTTAATATTTTGCACCATATTGCAGGCACCATTATAATCACTTTACATGAATCAGTTCCTTTCATCCTTCTAAGAACTTTATAAAAGTGTAGTAGGTACTGCTGTTATCTCCATTTTATAAATGAGGAAGCAGGCAGAGAGTGGTTAGGTAACTGTTCCAAATGTAGTCTCTTCACCATTTCACTGTGTTGTACCTCCATAGCTCTGACACAGTAATACTTTTCAAAAATTACATATCATGTGCTTACTAAATCAGCAATTAGAAGAATTAGAGTTTTAGCAATATTAAAATATAGGTAACACAAAATAGTTATACCTCAGAGTATATTATCTGAGAAAACTTTAAATACATTTAACATAAATTTTAGCATATATTTAATTTTAATAGCGTTTTAATAATTGGCATACATAATGACAAAAAGGATTTTTAAGTAATTATCTTTTTTAAAAAGTATAATAAAGTTTTAGTCTTTATATGCACTTACTGTGTACCACCATTAGTTGATTTGTATGCTGAGATTTAAGCATAAATAACTTTATTCTGAATTGGAATTTGATTTTTAATAACCAACTCGATAGTATCGGTTAATAAGAAGGAAAAGTAGAGACTTGAGTATATAGCATTGATGGTTTTGTTGATTGTAGTTCCTTGCTCCATTTTCCCATTCAGAGTATTGTTTGAAAATCAAAGATAAGAAAGACACATATTTTTAAATGTATGGTCCTGTTTAAATAGAGATTAAAATTTTATTGATTTTATGTTTATTTTTCAACAAAAATTAAAATTCTTTAACTAGATACTAATTAGAATATTAATTTGAATTAAGACACCAGATTTTTAAAATTAAGATTTTGGTTTTCTTCAGAGTTATATATGTAAATACGTATGAGGGTTTTTTGTTTTTTTCTTCTGAGATGGAGTCTTGCTCTGTGGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCACCTCAACCTCCCGGGTCCAAGCTAGCTGGGATTACAGGCACCCGCCACCAAACTGGGCTTATTTTTGTACTTTTAGTAGAGACAGGGTTCCACCATGTTGGCCAGGCTGGTCTTCAACTCCTGACCTCTGGTGATCTGCCTGCCTTGGTCCCCCACAGTGCTGGGATTATAGACGTGAGCCACTGTGCCTGGCCTGTATGAGTTTTTCATGATTTTTTCAAATAGAATATAATTTACCTATAAAATATATGGGCCAAATTGCCTGTTTGTTACTTTCTGTATTAATTAGAATGAGGTTCGTCATATATAACAAAAAACAAAAGTAAAAGTGGCCTTTAAACACAAGGTTATTCTTGTGTTTCAAGTAAAAGAATTCTTGAAAGCAAGTGATGCAGTGTTAAGCCCCACAAAGTTATCAGGGGCTCCTTGTTACTTTTCTCCTGACCTCAGCATATGGTTGCCATCCTCATCTTCACTTCATGAATCAAAATGGCTGTCAGACTCCAGCTGTCATGTTAGCATTAGAGACAGCAGGAAAAAGGAAGGGATAGAAGGCAAAATAGCTTCACCATATTGTCAAGTTTAAGGAGTCTTTCCAGAATGTCATCCAGTAAGTTCTACTTGCACCTCATGATCCTACTGAGTTTGTAAGGAATGCTGGGAGATTCAGTTTAGGGGTTTTTGTTTTTGTTTTTGTTTGTTTGTTTTTAGGATCTAGGCAAATTGACACCTCAAAATAGTCAAATTTCTATTAATAAGGAAAAGAAATATGAATGTTCTCTCAGTGTCTCCTCTACTGTCCTATCGATCACCGCCATTATTAACATCATAATTTTCTTCCGTGTCCACTGTCCAAGTTGGTCTCAACCTGAGCTTGAGCCTTAATCTTAACCAGCCTGAGTGGTCTGCTTTGCTGGGTTCTATAAACATTTGCTAAATGATCTAAGATAGTACTTTCATTGATGTACTTTTAAAAAGAGTATAGGAAGTACCATGATGGTTATTAGTAATTATCACTGGGGTGGGCTGGAGGGAATTAAACAACTCTCAGTTGTTAGTCTGAGAGTATTTGAGACATTGCCGAGAGTATTTCAATTTCTGAGATATTTTTGATTGTTATAACTGGAGGGGCTGCTACTGGCATCTGATAGGTAGAATTCTGAGGTGCTGTGAAATACTCTATATACACAGGACTTCTACTACAAAAGATAAATATTATACCCTAAATGTCAGTATTGCTGGGGTTGAGAAACCCTGCCTTATCCAAATGACATTCTGCCCATATTGTATTGTGATAAGGTTTCACAGAATGTTATCTCTCATTATAAACCTACATAATAATTGATAATCACATTTATGTAGTTAAATTGTAGTTAAATCTTAAATAGTATAAGTGACAGTGATTTACATAAAGAAATGAAAGTTAAATTAGTCATGTTTTACAAGTGGTTGTTTTTATTTTATGTTACAAGTATGTGTTCATGATTATAAAATTTTTCAGTAATGGCAGTTATATTTAAATAATGTCAGTTTGGGTTTCTAAGTCTGTAAAATGTTATAAATTAGTCAATTCTCTTGGAAAATATTCTGGGAAAAGTAACCTCTTCACACATGTGTTATAAAG
Seq C2 exon
GAAGCTGAACGGATGCTTCAAGATGATGATGATACTGTGCACCTTCCATTTGAAGGGGGAAGTCTCTTGCAAATTCCAGTCAAGGCCCTAAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-SLC4A7:NM_003615:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)