DreINT0151598 @ danRer10
Intron Retention
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42796664-42797847:-
Coord C1 exon
chr16:42797716-42797847
Coord A exon
chr16:42796759-42797715
Coord C2 exon
chr16:42796664-42796758
Length
957 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
ATCTCTTTTCTATTACCCAGGAA
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTTCTTGCTCTGGTATTTGTGCGGAAGCTTCTAGATTTCTGCTTTACTAAGAGAGAGCTCAGCTGGTTGGATGACTTGATGCCAGAAAGCAAGAAGAAAAAGGAGGATGACAAAAAGAAAAAAGCAAAAGAG
Seq A exon
GTACTGTTAATATTGAATCACATAATTTTAAATTACACCTCTGTACTGTATTAGGGCAATTGTTAGGGCCCAAGCCCAGTGGGCGAAAGTCTCTATTGTTCTAAGGATTTAACTCAAAGTAAGGAATTGTTCCTGTTCCAGTGTTCTTGTAACTGTGTTTACATTCAGTCAACAGCGGTGCAGTACCTTACTACTTTTGGGTTGGACCCACTTTTGCCTTTAGAACTGCCTTAATCCTTTGTGGCATATATTCAACTAGGTACTGGAAATATTCCTTAGAGATTTTTGTCCATATTGACATAATAGCATCACACAGTTGCCGCAGATTTGTTAGCTGCACGTTCATGATGCGAATCTCCCATTCCACCACATCCTAAAGGTGCTCTATTGGATTGAGATCTGGTGACTGTGGAGGCCATTTGAGTTCAGTGAACTTATTGTCATGTTCAAGAAACCAGTCTGAGATGATTTGTGCTTCGATATTGTGCATTACCTGCTGAAAATAGCCATCAGACCAATCTTTGAGATGGTTATGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAACCAGCCCATCTGGCACCAACAACCATGCCTTGATCAAAGACACTTAAATCGTCTTTCTTCCCCTGTCTGATGCTTGGTTTGAACTGCAGCAGATTGTCTTGACAACGTCTAGATGCCTTGAGTTGCTGCCGTGTGATTGGCTGATTAGAAATTTGCATTAACAAGTGTTTGGACAGGTGTGCCTAATAAAGTGGCCGGTGAGTGTATTTTTAGTTGCTTACAGAGATTACTGACGGGTTAAATGTTTGTGCCTGTGGTGCACTGTGTTTCTGAAGCCACAGAAGTGGCAGTGCCACAAGAGCTTGGGGCCCTCAATGCTCTTGAAAAGAAGGCTCAACCTTCTTGTCAAAATTGTTTACCAATCTCTTTTCTATTACCCAG
Seq C2 exon
GAAGCACAGCGCATGATGGAGGCAGAAGAAGAAATAGAAATCCCCTTTGACGGTGGTGACCAGCTGGAAATTCCTGAGAAAACCATTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952:ENSDART00000112879:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTGGTATTTGTGCGGAA
R:
CTGATTTGAATGGTTTTCTCAGGA
Band lengths:
222-1179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]