HsaINT1042112 @ hg38
Intron Retention
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27383153-27386023:-
Coord C1 exon
chr3:27385892-27386023
Coord A exon
chr3:27383251-27385891
Coord C2 exon
chr3:27383153-27383250
Length
2641 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TTCACACATGTGTTATAAAGGAA
3' ss Score
3.85
Exon sequences
Seq C1 exon
GTTCTTGCATTAGTGTTTGTGCGCAAACTCATGGACCTGTGTTTCACGAAGAGAGAACTTAGTTGGCTTGATGATCTTATGCCAGAAAGTAAGAAAAAGAAAGAAGATGACAAAAAGAAAAAAGAGAAAGAG
Seq A exon
GTAAAAAGATAACAATTTTAAACTTACACCACTTCCTTATTTAATATTTTGCACCATATTGCAGGCACCATTATAATCACTTTACATGAATCAGTTCCTTTCATCCTTCTAAGAACTTTATAAAAGTGTAGTAGGTACTGCTGTTATCTCCATTTTATAAATGAGGAAGCAGGCAGAGAGTGGTTAGGTAACTGTTCCAAATGTAGTCTCTTCACCATTTCACTGTGTTGTACCTCCATAGCTCTGACACAGTAATACTTTTCAAAAATTACATATCATGTGCTTACTAAATCAGCAATTAGAAGAATTAGAGTTTTAGCAATATTAAAATATAGGTAACACAAAATAGTTATACCTCAGAGTATATTATCTGAGAAAACTTTAAATACATTTAACATAAATTTTAGCATATATTTAATTTTAATAGCGTTTTAATAATTGGCATACATAATGACAAAAAGGATTTTTAAGTAATTATCTTTTTTAAAAAGTATAATAAAGTTTTAGTCTTTATATGCACTTACTGTGTACCACCATTAGTTGATTTGTATGCTGAGATTTAAGCATAAATAACTTTATTCTGAATTGGAATTTGATTTTTAATAACCAACTCGATAGTATCGGTTAATAAGAAGGAAAAGTAGAGACTTGAGTATATAGCATTGATGGTTTTGTTGATTGTAGTTCCTTGCTCCATTTTCCCATTCAGAGTATTGTTTGAAAATCAAAGATAAGAAAGACACATATTTTTAAATGTATGGTCCTGTTTAAATAGAGATTAAAATTTTATTGATTTTATGTTTATTTTTCAACAAAAATTAAAATTCTTTAACTAGATACTAATTAGAATATTAATTTGAATTAAGACACCAGATTTTTAAAATTAAGATTTTGGTTTTCTTCAGAGTTATATATGTAAATACGTATGAGGGTTTTTTGTTTTTTTCTTCTGAGATGGAGTCTTGCTCTGTGGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCACCTCAACCTCCCGGGTCCAAGCTAGCTGGGATTACAGGCACCCGCCACCAAACTGGGCTTATTTTTGTACTTTTAGTAGAGACAGGGTTCCACCATGTTGGCCAGGCTGGTCTTCAACTCCTGACCTCTGGTGATCTGCCTGCCTTGGTCCCCCACAGTGCTGGGATTATAGACGTGAGCCACTGTGCCTGGCCTGTATGAGTTTTTCATGATTTTTTCAAATAGAATATAATTTACCTATAAAATATATGGGCCAAATTGCCTGTTTGTTACTTTCTGTATTAATTAGAATGAGGTTCGTCATATATAACAAAAAACAAAAGTAAAAGTGGCCTTTAAACACAAGGTTATTCTTGTGTTTCAAGTAAAAGAATTCTTGAAAGCAAGTGATGCAGTGTTAAGCCCCACAAAGTTATCAGGGGCTCCTTGTTACTTTTCTCCTGACCTCAGCATATGGTTGCCATCCTCATCTTCACTTCATGAATCAAAATGGCTGTCAGACTCCAGCTGTCATGTTAGCATTAGAGACAGCAGGAAAAAGGAAGGGATAGAAGGCAAAATAGCTTCACCATATTGTCAAGTTTAAGGAGTCTTTCCAGAATGTCATCCAGTAAGTTCTACTTGCACCTCATGATCCTACTGAGTTTGTAAGGAATGCTGGGAGATTCAGTTTAGGGGTTTTTGTTTTTGTTTTTGTTTGTTTGTTTTTAGGATCTAGGCAAATTGACACCTCAAAATAGTCAAATTTCTATTAATAAGGAAAAGAAATATGAATGTTCTCTCAGTGTCTCCTCTACTGTCCTATCGATCACCGCCATTATTAACATCATAATTTTCTTCCGTGTCCACTGTCCAAGTTGGTCTCAACCTGAGCTTGAGCCTTAATCTTAACCAGCCTGAGTGGTCTGCTTTGCTGGGTTCTATAAACATTTGCTAAATGATCTAAGATAGTACTTTCATTGATGTACTTTTAAAAAGAGTATAGGAAGTACCATGATGGTTATTAGTAATTATCACTGGGGTGGGCTGGAGGGAATTAAACAACTCTCAGTTGTTAGTCTGAGAGTATTTGAGACATTGCCGAGAGTATTTCAATTTCTGAGATATTTTTGATTGTTATAACTGGAGGGGCTGCTACTGGCATCTGATAGGTAGAATTCTGAGGTGCTGTGAAATACTCTATATACACAGGACTTCTACTACAAAAGATAAATATTATACCCTAAATGTCAGTATTGCTGGGGTTGAGAAACCCTGCCTTATCCAAATGACATTCTGCCCATATTGTATTGTGATAAGGTTTCACAGAATGTTATCTCTCATTATAAACCTACATAATAATTGATAATCACATTTATGTAGTTAAATTGTAGTTAAATCTTAAATAGTATAAGTGACAGTGATTTACATAAAGAAATGAAAGTTAAATTAGTCATGTTTTACAAGTGGTTGTTTTTATTTTATGTTACAAGTATGTGTTCATGATTATAAAATTTTTCAGTAATGGCAGTTATATTTAAATAATGTCAGTTTGGGTTTCTAAGTCTGTAAAATGTTATAAATTAGTCAATTCTCTTGGAAAATATTCTGGGAAAAGTAACCTCTTCACACATGTGTTATAAAG
Seq C2 exon
GAAGCTGAACGGATGCTTCAAGATGATGATGATACTGTGCACCTTCCATTTGAAGGGGGAAGTCTCTTGCAAATTCCAGTCAAGGCCCTAAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867:ENST00000295736:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains