GgaINT0101760 @ galGal3
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38442375-38443169:-
Coord C1 exon
chr2:38443038-38443169
Coord A exon
chr2:38442425-38443037
Coord C2 exon
chr2:38442375-38442424
Length
613 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGTTTCATTAAAATTTACAGGAA
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTTTTAGCATTAGTGTTCATTCGCAAGCTCATGGATTTATGTTTTACCAAAAGAGAGCTTAGCTGGCTCGATGATCTGATGCCAGAAAGTAAAAAGAAGAAAGAAGATGACAAAAAGAAAAAAGAGAAAGCA
Seq A exon
GTAAGTATAAAAATACTCAAACTGAACATGTTGTAAATTAATAGAAACCACTTAGTGGCACTTAAAATTCTTTTACCCAAACATAGATATTGAAATCCTTTACTAATGAAACTTACTGATTGAGCAACAGTTACTGGCTGTTAAGGACAAGTCACTATTTCAGTGATGTTGTTATGAATTATGACTCTTTATGAAGTGAGCAAACAAAGTTGAAAGAAGTGGTTCTTAGCACAAGATTTTGTTACCTGTGTCGTTCATCAGGTTTGAATGTAGATATGGATAGATGGGAAAGAAAAACAGTGAAGTAGGAATCTTTACTCTGGTTAAAGTAGTAGCAAAACTTTACAGTACAAAGGACCTTCTCCTTGTGTGTGTATGCAGAATGATGGTTAAAACCAACTGCTAGTTGGTAATAACATGTAACTGAATAATAGTTGTGTAACTTCTCAGTAAAAGTATCAGCTGACTGTACACCAACTAGCTGAATTTCTTAAGCTTAAAATTGTTCTGAAGTGTTTTGCCTCATAACCCAATGGAATACATTGTCAGTGTACAAAGTTCTTGGTTTCTTCTGTATGAGAAATCTTATAAAATGTTTCATTAAAATTTACAG
Seq C2 exon
GAAGCAGAGAGAATGCTTCAGACGGAAGACAACGAAAGTGTACACCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTAGCATTAGTGTTCATTCGCA
R:
TGGAGGTGTACACTTTCGTTGT
Band lengths:
182-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]