RnoINT0138556 @ rn6
Intron Retention
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11840520-11844299:-
Coord C1 exon
chr15:11844168-11844299
Coord A exon
chr15:11840618-11844167
Coord C2 exon
chr15:11840520-11840617
Length
3550 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TGTCTGTGTGTGCTTTAAAGGAA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTTCTTGCATTAGTCTTTGTGCGCAAGCTCATGGATCTGTGCTTCACAAAGAGAGAACTCAGTTGGCTTGATGACCTCATGCCAGAAAGTAAGAAAAAGAAAGAAGATGACAAGAAGAAGAAGGAGAAGGAG
Seq A exon
GTAAAAAGGCATCCATCCCTTTGTTTAAGGATTCGCACCACTCAGTGGGTCCTCTTACCATCCTCAAGGAGCCTTATGAAGCCCAAGCCCTCCTGATTATTCCATGTTAGTGAAATGAGGCGGAGCGGTAGGCGGTGTTACCCAAACACTGCTTCTTACCTGTCTCACCATGTTGCATAGTCTGGAACACAAAAACAAAACAAACAAAAATAAGGTTGAGCAGTACTAAAGCATCACACAGTAATTTTATTATTAGCACACTGGGTGTGTTAATGTGCAGTACAATAACTGTTTTAGTGGTCTGACATCACTAATGAAGTTTAAATGTTCTTAAGAGAGTTCATCTGGTGAAAGCAATTACCATACAAGCACAAGGACCTGAGTTCACAGTCCTTACCTGCACCCAGTTTAAAAGCTGGGTGTAGTTGTTTGTACCTGCAGTTACCACCCTCTGGATCCTAGACAGGAGCTTCAGATTCAGGAAGAGACAACAAGTGTATCAAAGCAGTAGATGAAGTGTCACTGTCTTAGTTAGGGTTTTACTGCTGTGAAGAGACACCATGACCAAGACAACTCTTATAAAGGACAACATTTAATTGAAGAGGTAAAATTCATGATCATGATGGTAACAAGCACAGCAGCCTACAGGCAGACATGGTTGTAGAGGAGCCCAGAGTTCTGCGTCTTGATCCAAAGGCAACCAGGAGAGACTAGATTCCACAGGCATTCAGGAGGAGGCTCTCTTCCACACTGGGTGGAACTTGAGATCCCACGCCCACAGCAGCACACTTCTTCCAACAAGGACACACCCACTTCCCGTGTACCAAGCATATTCAAACCACCACAGTTATGGAGCAAGACACCCGATGATCTCTCTTCTCTATAGGGACACACACAGACAGACACACATGCAAATAAACCCATAACCAAACGTAAGTCCCTCAAACTTGTACGTTTCGGGGTTCTGTCCATGCTGCTTTGAATTCTTGAGTACAAAGTCCTCCTCGCAGCCTTCCAAGTAGCTGGAAATGAAGGCATACCGCCATGCCAGACTGTTTTTTTAAGTTTTTGTTTTAAAATGCATTTATCTATTATTGTGTATGTGTAATGCTCAGAGTGTGCATGTGGAGGCCTCTATGCCACGACACACATTTGGAGGTAAGAACACAGCTTTCAGAAGTGTGCTCACACTTTATGTGGGTCATGGGGTCAGGTTTATGTCGCATCAGCTACCTTTTCATCCTGAGCCTTTTCCAGCCTGTTTTTGTTCTCATTCACTATTATGTACCACCATTAATTGATCTACACAGTTATATTTAAAAATACTTCATTCTGGATTTGATGGCTTGTTTTTAAACTTTTTACTCTGTTACTATATAGGCAGTAGAAGCAATATGTTTTGTCGATTGTAGTATTTTCCTCAGTATTATCTTAGGGTTGTTATTGCTGTGATTAGACACAATGACAAGAAATGTCTTGGGGATGAAAAGGTTTATCTCATTCACAACTATGCAAAAGCAGTGAAGGCAGGAACTCAGGTAGTGCAGGACCCTGGGGGCCATGAGGAGTGCTCCCCATAGCTTGCTCCTCTTGCTTTTCTGTAGAGCCCAGAACCAGTAGCCCAGAGGTAACCCCATCTACAGGGCTGAGTCTTCCCATCAGTGAGTCATTATTAAAATGCCTTACAGACTTTGCGTGCAGTTGGATTTTTATGAAGGCATTTTCTCAGTTGAAGCTCCTTCCTCTCTGATGACTCTAGCTTATATCAAGTACTAATTTTTAAAAATGTCATGGTGTTACTTAAATATAGATAGGGAAGGAATATACTTCTCAGCCAGAATTATGACTAGAATAGTCATTGCAACTACTTGAATGAAGTTCTAAATTTAAAGTAAGAGTTTTGATTCCCTTAACACTGCATGCATAAGTATGTAAGTTATTGGATATTTTTGTAGAATATTGTTTATTTCCAAAGTATATAAAATATAAGCAGGTTATGTTGCTTGCTTTTTGTATGAGTTGGTTCAGAAGCATATACATTTCAAGAACAAAAGTGAAAATGCATTTTAAATGCCTAGGGATCTATTTCCTCGTTGCTTTTTTCGGTGACTTTGTGTTACTGCTCCCTCTGTCTAGCATGTAGTCTCCATTTTCAGATTCACCTTCTGGATCAGAATAGCTGATAAGTCAGACTAGAACAGAAGCAGTGGAAAGAAAACAGAGGCAAAAATGAACATTATCTGTGTGGGAGAAACTTTTGAAACTGCCATTCAGCTTGTCCAAGTTCTCCCCCACTGAGTTACAGAGAATGCTAGGACATTAGTGTAGTAGTTGTAAATCTGGGTACATTGTCATATTGGCATAATGTTTTTGTTCAGTGTGTAAAGATTATCCTTGTGTTATTCAAATATTGATTTCTCTGTCCTCATCTCTTGCTTCAATCTGGACATGCATTGTAATTCTTATGTCAAGAATCTTCCATCTCAAGTTTACCATTTTATTCTCTGCTTTGTCAGTCAGCAGACTGTTGGGTAAAAGAGAGAGAAGGGTGGGACTTATGCCAGCCAGGGGGGGACAGAGAAGAGTAAAGCAGATTGAGCTATAAGGGAGGAGAAGGAACATCATGGAAAAAAATGGATCTGAAGCCTAGAGAGCCAGACCAATACTTAAAATGCAAGTGTCTTGGGGGTTCTGGCTGGGAGGTAGCCATATTAGCTTAGAGGATTAGAGTAGATTAATGACTGACCAGGTATTGTGGTAAAGCATGATTAAATAAATGTCGGTCTCTTCTGTGTTGTTTCATTGGGGAACAGGCTAGGATTAAGAAACCAGCTGTTCTATTCATTTACTGCATACATTTACATTAAAGTTACCATTACTTTGTCACTTGGCAATGGGATTTGTGATGGGGGATGAGCTTGAGTACTCTCTGCTCCCTCTGCTTCTTTGGGTCTTTTCTCCAGTATTAATGGTCATAATTTTAGTTTATGTTTTTGTTCAGGTGGTTTTCAACCTAGGATGATGTCCCACCTAAGGGGCATTTTCAGTGTCAGAGGTATCTTTTTTATCACCACTGGAGGAACAGTGGCACACAGTAACATTTGGACTTGAAAAATGTCTTAAATCCACGATGTTCCCTAAAACAAAGAGGCGTGCTCTGTCTGTCAGTGTTCTTACTGAGGAGACAGCCTCAGTGGGTGACAATCTTTTACTCTGCACACTGCTGAGACACGAGATTTCAGTTCTGTCTTCCTTGCTATGTATGTATGGTAACCAGTACTCAGACCTAAGTTATACTCATTTTATACAGTATTGATTATTTTTAGAAATAGGGTTATTCCTTGGGAAATAAGTTTGTACAAGTAGTTATTTTATTTCATACTATAAGTATGTGTTCCTATTGCCAGAAGAAGTTTTCTGTTAGGGTAGATACTTGTTTAAATAATGCTGTCAGTTTGGCTTTCCAAGTCTTTAGGGTATTTTTGGAAACAGATCCTTCTGGAGATGTTTTGGAGGAAGTAATCTCTTCGTGTCTGTGTGTGCTTTAAAG
Seq C2 exon
GAAGCTGAGCGGATGCTTCAGGGTGACGGGGATACTGTGCACCTCCCATTCGAAAGGGGGAGTCTCCTACAAATTCCAGTTAAGACCCTAAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957:ENSRNOT00000008759:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]