HsaINT0157142 @ hg19
Intron Retention
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101245639-101251632:+
Coord C1 exon
chr8:101245639-101245765
Coord A exon
chr8:101245766-101251467
Coord C2 exon
chr8:101251468-101251632
Length
5702 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTGTCTTCCTACTTACAGAAT
3' ss Score
10.46
Exon sequences
Seq C1 exon
AGCTCTCTGTTACTTGAAGCTGTGCCAGTTTGAAGAAGCAAAGCAGGACTGTGATCAGGCACTTCAGCTAGCTGATGGGAACGTGAAAGCCTTCTATAGACGAGCTCTGGCTCATAAAGGACTCAAG
Seq A exon
GTGAGGAAATCTTCATTTTAATGCATAAACTTCAGCTCTGAACAAATCAAGTGGTTTTCACAAGCATAAATCTCCAGATCTTGGGATGGGATTGAGGTTATTCTTGGATTTAATCCTAGAACTGTACTAACCAGTTCTAAAACCTTGATAGAGGCCTCAGATTTCACCCCTAACCATAATGTGAAACTAGATTGCTTCTAAGATTCCTTCCAGCTCCAAAATAATGATTTATTCTCTAGTTTTCTGAGGAATATTGTTAGTTATAGTAGGTTCATTTTAAGATAGAGGAAGGTTTGGTACTGAATTACCGAAACTAGCAGTAATGCTGCTGGTTCCTCCGGCAAGGATTGCTGTTGGAGGTTGGGTGGGGAAGGCATCAGAATAGAAGATGGGTGACCCAGCGGAAGTTGGGAGAGACACATCGGAGACTTGAAAGCTTATAGTGATCTGGGCCTTAAGCCAGCTGATGGTCAGTGTAAATCTGTAAAATGCCATTCTTCTCTAAGAAAACCATGCCATTAGTTTAGAAGAAAGTGGATATTGTATCATTCCACTTTTCTTCACACAGATTCTTCTGCATGGAAATCCTGAGGAATGAATGTTCATATTTATAGAAAATAACATCACAAGGAAAAACCAGAACATATTGGAAAATAGTACTTCCTGAAATAATTTTTTAAGCTCAATTTTATTAAGGTGTAATACAATGAAGTTCATACATTGTAATTGTGCAGGTCATTGACTTTTGGTATGTGCATATCCTCTTGTAGCCAATATCCCAATCGAGATAAAGAACATTTTCTTCTGAAGGTGGTGTGTGCTAAAAAAAAATAACATTTTCATCTTTCTAGAAAGTTCTCTGTGCCCCTGTACAATAAATCTTCCTCCCTCCACCCCTACCCTCAGGCAGCCATTCATCTGATTTCTATCACTATAGATTAGTTTTGATTGTTTTGGACATTACCATAAATCATATAGAATGGACTCTACTGTTTGGCTTCTTTCAGCATAACCTGAGATTTGTTTATATTGTGTGGGTATCAGGAACTGTTCCTTTTTATCACCGTGTTGTATGAATATATCACAATTTGTGTATATATTCACCAGTTGATGACACTTAGGTTGTTTCCAGTTTGGGGCTGTTAGGAATAAGGCTGCTGTGACATTCTTGTGTACATTTTTAATGGATGGACTTGTTTACAAACTGTACAGCTGGAGGCCAGATGTGACTAGGAGTGGGGATAGAGGGAGATGGTCAGATCCTGAGGGGCTTGGTAGGCCATGCTGAGGAGGCTGGACTTAATTCTGAAGGTGATGGAGCCTCCAGAGCAGGGTAAATGGTGGTGTAATGGATCAGATTTGGGGACCTCATGGAAGGTTGATAAGAGGGGCCCAGGATGAGGAGGAAGGTAAGTGAGAGATCACCAAGGTGAGAAGCAGGTACCTGAAGGAAAGTAATGTCCAAGGAAAGGGAGAAGTATGTTAGCTGCTGTGGCTGCTATAACAAAGCGCCATAGACTGGGTGGCCTGAACAACAGAAATCTATTCTGGAGGTGGGAAGTCTCAGCTTGCGGTGTTAATAGGGGTGGTCTCTTCAGAGGCCTATGTCTCTGGCTTACAGTTGCTGTCCTCTCCCTGGGTCTCCATGTGGCCTTCCCTCTGTGTGTGTGTGCCCAAATCTTCTCTTTTTATAAAGACACAGTCATCTTGGACTAGGTAGGGCCTACTGATTTTAACTTGATTACCTCTTTAAAGGCCCTGTCTCCAAATATGGTTACATTTTGAGGTACTGGAGGTTAGAACTTCAACACAGGACTTTCTGTGGGGACGTAGTTCAGCCCATAACAGAAGGGAAGGGGCCAATTCAAGGGTTTATGGTAAAGTTGACATAGCAGTCAAATGTCTAGGGGAAGTGATGGAGGGGATGCCTCCCAGGTTCTGGCTGGGTGGCTGAGGGTAGTGGTGTGATAATGGGGAGCATTCAGGAGCGGGGCAGTTTGGGAGTGGGGAGAGGATTGTTTTGACTGATTGAGTCTGAGATAGTTGTTTTAATTCCGTGCCCATGACTGAAAGGGAACTATCTAGGTTCTGCAGGGAGAAGAGCAGTCATGTTGCATAATATAGCAAATGAGGACCACCCAGGTGCACTGAATGGCCACCTTTTCCAGATTGTAGATCCACTCTGGCTGCAGTGCAGTCAGCGTGCATGTCCCGCCAGGACCCCCGTGCTGCCCTGTGACCCCCGCCCCATGCTGAGGGAGCCACACAGTGTCCATGTGACCCTAACACATGCCTCCCCGCCGGCCCTCTTTTTTTTTGGTTAGCAACACACTCACTTGTAAAAAAAATTCCTAGATGGTGTATGGCACCACAAATTAAAAGAGACTCCTTTGAAATTTACTCACCTCTTTGAGCTTAGTAGATTTGGTAAATGAGGATCTGTATGGCTCATGAGTTTACAGATGGCCAAACTCTTGGAGCACATTTACCTCTTACTGGCTGCCTGACTTTCTGAACCTGGTGAGCTGACTAAAGGTCAGAAGCTGCACCCTAATGAAAGACTGGACTTTAGTTTGTGTGGGTATCATCATTAATACTTCATTGGACTTTTCTATTTCCTTGGAATGAATTCCAGAAATTATATTATGATGCAGAAAAATAATCCCAAATTTGAGTAATCCTATCCCACTAGATTATGAGGCTGGTAGCTTATAGCTTGATTTGTTGTCCAGTAATTTGAGGTATGTGCCAGGTGAATTTAATTTCAGAATTTTAAAAAATGTTTAAGAGAGACAGGGTCTCACTATGTTGGCCAGGATTGGTGTTAAACCCCTGGCCTCAAGCAATCCTCCCACTTTGGCCTCTCAAAATGCTAGGATTACAGATGTGTGCCACCATGCTTGGCCTAATTTCAGGATCTTCAAAGGCTACAACTGCTTATAGAATGTGTCAGAACTCACGCCCAGGCCTGTTTGCCCAGGGTGACTGCAATGAGGAAGTGGCACAGGGGCTCACGGTGGCAGGTGTCCTGCCTTTAGCTCCCAGCTCAACTCTATGTTTTCCTCAGATCTTCTGTTTGTTTTCTGACTTTGTTATTTTTAATGGTGCCAGCTTTGAAAAATATGAGCTTTCTTTAATGTACAGCTGTTCTTTGTAAGAAAAGATCACTGAACATTTTGCTTTTATTTACAATTTATTTCTCTTATTGAGTGCCAATTATGTGCTAGGTGTTAGGAGTATAGAGGTGAATAAAGACATGGTGCCTACTTAGGGAATTTACACCCAATAGAGGGTGCTGCAAGATCCACCCAAAAGAGGATGCTGTAGAGGATGATACATACAATTGTTATGTATCAATACAAATATCAAAAAGAATATCATAAAATAACTATTGCTTTTATGGTTTCAGCAAAACTATTAATGGTAAATATCACAAACACGTGATTATAATACATCCCTTTTTAAAGGCCTAATGAGGTTAGCAACTTTTAATGCCTTCTTTCTTGTCAAAGCTACATTTTCTGGTTTGTTGTTGTTATTGTTTGTTATTTGTTTATTTTTGAGACAGAGTCTTGCTCTGTCACTCAGGCTGGGGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCACCTCCAGAGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGACTACAGATGTGCACCACCACATCTGGCTAATTTTTGTATGTTTAGTAGAGACGGGGTTTAGCTGTGTTGGTCAGGCTGGTCTCGAACTCTTGGCCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGACACACTTTCTATGAGCTCTGCTCTTCCCTCTACACTGCATGGCTGGGTTCTCTTCAGGTCTTGACTTCTCTGACACCTGTAACTGTAGAAAAAGGAGGCTCTCTTGTTAGTATCCATCTCAACCTTTAGTTTTCTCCATGACATCAATGACAGTCTGTAATTATCTATTCATTTGTTTACAGGTTTTTAATTGCTTCCCCTCATAGGACGTAAGCTTCCATAAATGTAAAACTTAAGTCTGTCTTTCTTTGTCTTTTCCGTGGTCCTCTTAGCTCCTGGCACATGGACGTGCTCAGAGACCATCTGTGAAGTGAATGAGCCTCGCCCCCTCTTAGCTGCCTCCTTGCCCAATTCTGTCTATGCCCTTGCTGCCATTCTGCCCTCTTCATGCTTGTCTGCAGTGCTAACACTTGTCAACATGCATTTCTTGTTTTCTTATGTCTCTTCCAACCAGTCAGGCTGCTCTTTAGGCAGAGACTTTCCGGATTCATGAAAATGATCCTATTGACTCCTAGGGTGCTGAGCTTCCATTTCCAAGGCTGTGGCTCACAGGTCTCTATTTCCAGTCCTTTCCCTTGAGCTCCATGCCATGTAATCATCCACCTTCTGGTCATTGCTGTTGTGACCATCCCATTCTTCATTTTTAAAATGGGAACAATAGAAGTTAATATTTGTAGGGCTGTTGTGAGGGTAAAGTAATAATTGTAAAATGCTTAGAATGGTAAGAATCAGCCTTTATTACTTCCTCAACTTGCCCTCCTGCTCCACTCCCTTGCCTTTCAGGTATGGCTCCCTGCCTAGAACGCTTAGGATATAAATACAGTGTCATTTTTCCCCCGGTAAGGTTCCAGTGCTGGTCTAGGACAGTGGTATCTGGAGATTTGTTATACTTTGTAAATAATTTACTTTTATAAACTAGAGCAGATTTAAGGTTATCCCTTTAAATATGTCCCTCTTGCTCTGGTGTGTTGCTGTAGGGGAGGGGAAAGGCATGTGGGATTACAGCTAGGCCCCCGGGAATGTCACATAATCACTAGCTCAGCTTATCTGTGCTCAGCCTCTTGTGCATGCTGTTACTGATGTGTCATGAATACTTGAAGAGGTTACACATCCTTGCAATTCTTTGCCTCTTCACAGTTTGGTTTATTCAAAACATGGGTCTAGTCTGTAGTTTAGAACATAGCTTGTCACAGCAGACTGACTTTGGGGCATCTGTCTTTGCTGCTAGATTCAGTGGTCATGTCTTGTTAGGTGCCCTTTCTTTCCCTCAACTTCTTCAGTGTATTGTGTGACTCATGGAAGATTAAATGTTGACTCTAGCCAATTCGAAGAGTAAACAACCTGGAAGGATTTTATGGAACAAAAGTATTATAATAACTACCATTTGCATAGTCCTTTATAGGTTTAAGCCACTTATTATTTGTTCATTTATTTCTTGGTACAGCCTTGTGAAAATTTGAATAGAGCTTTTGTTCCCCTTATGTTAAAGATGAGAAGACTGAAGCCCAGAAAGGTTAAGTAGGATCTTAAGTTTCATTGCTAGTAGGTGCTAATACAAGGATGAGTTCATTCTTTCATTTATTCATTCAGCAAGCAACAAGTGCTTATCATGTGTTAGGGACTGGGAAGGTTGTGGTGATACAGAATTTAACTTGCGTTTTCTAACTCCAGATCCTGTGCTTTTTCTTCTATAGTCGATGTTCACTGTATCATGGGTTATACTATTTCAGCTGCATATTCACCCCACAGGCTCACTTTGTAAGAGTGGTATTAATGTGGACCCTGCACACATACTGCACAGCTCACTACATCCACCCCACTCCCACTCAGGTTACTCTAGGCTCCTTCTATTTATGAAAGTTATTTTCTCTGTCTTCCTACTTACAG
Seq C2 exon
AATTATCAGAAAAGCTTAATTGATCTCAATAAAGTTATCCTACTAGATCCAAGTATTATTGAGGCAAAGATGGAACTGGAAGAGGTAACTAGACTCCTTAATCTTAAGGATAAGACAGCACCATTCAACAAAGAAAAGGAGAGAAGGAAAATTGAGATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450-SPAG1:NM_172218:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
A:
NA
C2:
PF0051523=TPR_1=PD(52.9=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)