GgaINT0096252 @ galGal4
Intron Retention
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128203795-128206313:+
Coord C1 exon
chr2:128203795-128203927
Coord A exon
chr2:128203928-128206148
Coord C2 exon
chr2:128206149-128206313
Length
2221 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGTTTCCCTTTTCCTGACAGAGC
3' ss Score
8.53
Exon sequences
Seq C1 exon
TGTTAGAGCTCTCTGTTACTTGAAACTGCATAAATATGAAGAGGCTAAGCAAGATTGTGATCATGTTCTTCAAATAGAAGATTGTAATATTAAAGCTTTTTACAGAAGAGCACTAGCATACAAAGGATTACAG
Seq A exon
GTGAGGAAAAAACATGGCAGGTATTCTTAAATACTTCTAAACTTGCTTATCCTCTTCAAAGGCAGTCATCAGGTAATTAAGTCAATGAGTGAATATAAGCAAAGTATGCAGTGCTGATGATGTATTACTTTGTAAAGCATTAGGCATACATAGAACATAAATATTTTTTGAACATATAAATCTGCACATTGATTTACAGTAATTTGAGAAAAGACAAGAACATTGGAATAAATAAGCTTTGAATAAAGACAGTTAAGCAGGTTTAAATTCTGTTATAATATTCTAGTATACACCTGTGTGTCCCACTCTATTTTTTTGTCAAGGTGTTCACTATATCTTAGCTGGTTACATACAGGTTCTCTTCAAGTCTATCTTCATCTGTTCAAACTAAAATCTCAAGCTGTCTTTTGGTGTCTGCACATATTTGAGTGCTTGTCATATTAAACCAGGGCTTTATCTTCCTTCTCGTCTACTTTCCTTCTCCATACACACTGGAAATCTTTGCCAGCGATTTCTTTTCTCACCCTGTGGGCAGTGTGGGGATTCAGCTTTTTCCTTTCCATCAGCACACTGAAATTGTTGTCATTACATGAGGTATGGTGCTCATGGATTCTTTCAGAGTTGAGCACCTAGGGACTCACAAGATGGTTTGTTTGGGGCAGATGTAATACCTTCATTATGGCCAGTTCTAGGGATGAGTGAGTCGTAATGCTGGGGAAAGCAACAAAGATGATCTGGGGTTGACAAACAACAAAAGATAGTAAGAACTAGATGTGTCTATTTTGTCAAGACATAACTAAGCTGGAAGGTGTTATTTGTTTATAAATATATCAGTATTTATATCACAAAAGCTGCAGTGAAATTTAATGATTTTTTTTATAGACTCACTGAGATATAGTTAAGGAAAGGTCAGGATGAAGATAGTACTTGTTTGATGAGTTAGGCCTATAACATTGGATATGGGACTGGACTATATCTCCTACAGCTGATAGCCCAGGATGCAGTTTAACACCTGGGAGGACTGATTGTTTGCTGACCATTGTGATCATTGTCAGAAGTCTGTTCTGGAACCTTATTTCTCTGTAGTTGTGACTATTCAAATGTTTTAGCTTAAATAGTAGCTGTTTGCTGAAGAAGGCAAGCTGTCCCTTTGTTGCATTCATTTGCAGACTTCTGGTTCTTTCATTCTTGTTTCATGATACTGCAAACTTTGATTTGCTTACGGACTTCATACAATTTCTCTGCACCTTGAATACAACCAATTGGTATTGAACAAAATATCTTGGATAGAAAAGAGAATGTCTGTCTTTTACACTGGTGGTTTCATTACTGTTGAGATGCTGAGGGAAGATGTTCACTGATGATGCAACAGAAGATTGTTTTTTTAGGGTTTGTTTTATTTTTCTGTGATAAAATGACCCTCAATAACCTTATGACACTGATTGGGAACAGAGGAAATACTGGCTCCCTCACTTCTCTGTGCACAGTCTTTTACTATCTGCTGTTACATGTTATCCTTATTTTCCATATAACTTGGTTTATTCCACATGGTATTTCAGCCTTCCTCAGAATTGATGCTACTCTGAACTTTGTCTCTCCGGAAAATATAATACAAAAATGCATAATACTGAAAGTCAAATCTTGAAATGAAGGCATTAAATAAATGATTCTGGAAGAATTGTGTGCTAATGTCACTCTATCTTTGTATTGGTCCCTCTGTACTTTATCCTAGAATTCATCACGTAATCTCAGTCTTCCCAAGTATAACCAGGAATTTCCTATGTCAGCCCGTTTGAGATGAGCTGTTGAAATGATGCCCAGGAAGTTAAGGCATACTTTTAATTTAAGTTTAGTTTGACCTACTGTCAAAGTACATAAACTGTTCATGGAGTTGCATTGAGAAGGTATTAAAATGTTAATTATGCTTAAAAGCAGCAATCTTCAGTAATCTATTTTCTAATACAGGGAACTGTTTTTCAGAGTATAAATTAATTCATAGTATATATTTAATATGAAAGTATTTAGTCAGAAAGTATTCAAACTCATCCTTGGTTTCCCTTTTTTCTTCCTTTAAGAATTGCACTGAATCTAGATTAGTTTTGTCTATTTAATGTCAAGATTTCAGCATTTCTGTTTCTATTCTGGTAAAAGCCAATATGATAATTGTAATTTATTTTTCTTGGGGTGCATTTATGAAAAAAAGTTTCCCTTTTCCTGACAG
Seq C2 exon
AGCTATCAAGCCAGTGTTGATGATCTCAAGAAAGTACTTCTAATAGATCCAAATGTTCTTGAAGCAAAAAAGGAACTGGAGGAGATAACCCAACTGCTCAGCCTTGGCGGCGTTGCTGTTGCTGACTGTCAACAAAAGCAAAGGAAGAAAATAACCATACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037:ENSGALT00000025838:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(38.6=60.0),PF0051523=TPR_1=PU(41.2=31.1)
A:
NA
C2:
PF0051523=TPR_1=PD(52.9=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]