MmuINT0150792 @ mm9
Intron Retention
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36156891-36163098:+
Coord C1 exon
chr15:36156891-36157017
Coord A exon
chr15:36157018-36162957
Coord C2 exon
chr15:36162958-36163098
Length
5940 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TATCACTGTATTTTTTTCAGAAC
3' ss Score
9.85
Exon sequences
Seq C1 exon
GGCTCTCTGTTACCTGAAGCTGGGCCAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAGCCACAGACTAGCGCTCGCCCAGAAAGGACTCGAG
Seq A exon
GTAAGGGCGTATCTGTCTGTCTGTCTGTATGAAATTTTATCTCCAAATGCAACAAGTGGTTTCATGAATGTAAATGTCAGGGTCCTGATCTCCGAGTGGTTTGACTCCTGGGATACACTGACCTGCTCAGCAGCCTCAGCATGGCTCTAGCTGTCACTCTCACCTCTGCTGTGGATCAGGAGTTCCTGAGTTTCTGTCCAGCTCCATTTCAGGCCATAGTGAGCATTTTTGCTACCGTTTTCCAGCTCCACTTTCGTAGGGTGTCAGGGAATGTTCGCCTTAAGGGAGATGGCTTGTGGCTGCTGTGTAAATATAGGGAACTTCCAAAGGAGGGGGGGAGGATTAAAACAAAAACTCAAGCACTAACAGTGCCTTCAGTTCCCAGCAGAGACTGAGGTTGGAGGTGGAGAAGAAACATGTAGTGGAAGCTGGCAGAGCTGTGGCCGAGATTCAGTGACCTACAGTGGCCTGGCCCTGAGCTGATGGCCCCTGTAGGACTAGAGTGGCATTCTTACACCATATTGTGAAGAAAGAAGGCTCTGTATAAATGTGCTGTCTGTATGCTAGCTCTCCAGAATGGAAATCTTTTTTTTTTTCTTTCTGCTTTTCAAATATAGGGTGTCATGTAGCCCAGGCTGGGCTCATAGTCCCCAGATAGTGGAACCTGACCCTGAACTTGGTTCTCCTGTCTCTACCTCCCAGGCACTGTTCTGCATAGAAATATGGGTCACTGAATGTTTATGTGTAGGGAAAATGTTACCAGATGTGGTGGATTGAAAGAAAACGGCCCTGTAGGCCCAAGGGGAGGTGTGGCCTTGTTGGAGGAAGTGTGTCTCTAGCAGGCGGACCTTGAAGTTTCAAACACTCAAACCAGGTCTAGAGTGACATTCACTGCTAAGCTCTCAGCTCCTTCTCCAAAACCATGGCTGCCTGCATGCCATCACGTCTCCTGCCATGACTAAATCTCTGACCTGTAAGCCACAATTAAATGCTTCCCTTTATAAGAGTCGCCGTGGCCACGGTTTCTCTTCACAGTGATAGAATCCTAAGACACCAGGGGCCTGTCAGGGAAGAATATACTTTCTGAAATGTACATAGGGAGAAACATTGCAGGTGTCCAGCCAGTCAGCGCAGAATGCATTTCCTGCAGTGTAGTTTTGGGGACAGAGGGATCTTATTCAGACAGGGTTCACTCTTGCTCACGGTGGTCTGGAACTCAGTATGTATCTCAGGCTAGCCTCAAACTGTGCTTTCCTGCCTCAGCCTCTCAAGTACTAGGAGGGCAGCTGGTACATGCCCTGGCCCTCTTCTCTTCTTTTCTCTTCCTCCCCTCCCCTTCTCTTCTTTTCTCTTCCTTCTCTCCTCTTTATCTTCCCTGTGTGGGGGTTCCCGTGTCCAGTTTGTCACAGGGCTAGGGCCACTCGTGGAGGTAGGATGCATGACACTGGAGTTTTGACTGCACTCACCCCACACCAGCGCCAGGTGGGTGTCGGGCTATGTGAAGCTGCTGGACACTGGCCCTGGGAGGTGGGGAAGCGAAGTCTGAGGTCCCCGGGGACTGCCGAGTCAGCTTGGGGGTCCCAGGGCCTGCAGAGAGGCCGGGACAGTCTGTTTCTCAGATTCTTGGGCACCCAGACACCGCTGGGAGCCGTGTGGAAGAGTTCAGAATGGAGTGGGGGCCCATGGCCAGATCTAGCCAGGGCCAAAGGTGGCTTAGTGGAGGCCGTGGCAGGGAGCACTGAGAGAGAAGCCTCCTGCGGGAGACTAGAGCAGCTCACAGCGAATCCCTATGAAAAGAGACAGTCCATGGCTTTAAGGCATTTATTGTCATAGTGGAGAGTAGCAATGAGTAAAACCTCACCCCATTTTCTCAGGGCAGGCCTGAGGTTAAATACCTTTTGCAGGGAGGAATGTCTGGGAAGGATAACTTAATTGGCTAAGCCCTTCAGGCCTTTAGGTACCTCATTAAATGGAGATCTGTCTTGAGGCTACATGACCTGTGGTCACGTCCTCTACCTATGGAGGGGCTTGGGGCATTGCCCTTATGTGACTGATTGTCACAGAAGTATGGAAAGCTGAGGCGTCCTGTAAGGAGCCTGGTATCCAGGAGCGTGGCAGAACACCTACCATTCTGTTCCTTGCAGGGTTATCCCCTGCCAGGTCACCTGTGGGGTCACCAGGGTTTCAAACCTAGTTCAACCAGAAACCAGGCTGCCTTTCATGGTCCCACACTGTGTGTTCACATGTCTACTTGATAAGCCAGCCATCACACTGGAGCAGGAGCCACCTGATACACCTCATTTAGAACTCTTTCAGAACTCTCTCTCCAAATATGGATGCATTCTAAGGTGTTACAGGTTAGAACGTCAGCTATGAATTGGGAGAGGGACTTTAACTCCATTCTTGTCACTGAATGGAATTGAGTACCAAAACAACAGCTATCTGTAAGCCCTGGACTATCAGGCCTCTCTAGATCTCACATCCTCTCAGGCTGTGTAGAGCCAGGCCTGTGCTTCCAGCGGCCAGGACAGATGCAGCCATGTGGAGTGGTGGCTGTGGCACATACTTACTGTGTGTCTGTTCATCAGCCCTCCCTTCCACCATCTTGCTGGTAGCATAAGTAATCTATAAGCCTCACATAAAGACCCTTTAGAGGGTTGGCACCCTAAGTTCAAGAAACGTCTCCACCACTGACTTACCCTATGGCTTTGGGCCAGTGTGGCCAGCTTCATGTACTCTGAATGGCCACTCCGAGAACAGGTCTACCTCATGCTGACCTTTCCTGCTGACTGAGGTCAGAGGCTCTGTCTAATAAGGACTGGGATTGTATACTTTCTTGGAGTGAATCTTAGCAGTGTCTATGATGGCACAGACAGATAATATCCAGTTGGAGCCGCTTTCTCCTTTGATTATGACCCCAGAGCCTGTTTTCCTGGCGGGGCACATCTATCTGTTCAGTAGGTTGAGGGCTAGGCTATGTAAACCCAAGGTCCAGTGGCCGAGGCCTTGTTTGTTTCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGGCCTGGAACTTGCTCTGTAGGCCAGGCTGACCTCGAATTTGGAGATCTGCCAGCCTCTGCCTCCTGAGTGCTGGCATTAAACATGTGTATTACCACTGCCACTGCCGCCTGCCGCCACAACCACCATGGCTTTTATGTGATGTGTCAGAACTTGGGCTTGGAGCAGATGCCCAGGATGCACAAGGCCCACCTTAGGTGGCAGGTTCTCTGCCTGAGCCTTCAAGCTGAAGGTTGACCGGAGTTTGTTACTCGAAGCTGGCTTTAAATGAATGTATTCCAGTTCTTTAAAAGAAGAAATATCTATGTGTTTGGTTTTTATTATGAATTTACTTACTGTTGGCTGGTTATATGCCAGCTGCTGTTGTTAGATGTAAGATAAGGTCCCTTTCTTAAGTTTATAGCAGTACAGTCTGTGAGTCCCAACTTATCAAAATGGGCAGCACCCTATAAAGTATCACTGTAATAGTTTAAGCATGCCTATTAATCGCATTACCATATGTGACTATACTGTACCTTTAAAATACTTGTATATGTCAGCATGTGCCACTGCACAGATGTGGTCAGAGGCTCCTCCATGGCTTCTCTCTTCAATGATGGGGGTCCTGGGGATCAAACTCAGGTAGCCTAGATTGACAGAAAGCACCTTTACCATTGAGCCATCTCACCAGGCCCATTGTCATTTCCTTAAAAAGCATTATGAGATTGTTAACAGCTTAAGAAAAATCAATCTCTCTCTCTTTCTCCCCCCTCCGCCCTGCTCCTCACCATCCCTGCCTCTCACCCCTTACTTGCCCATCCCATGTATGTGTGCCCGTGCAGGCTTGCAGCATCCTCTGGACACTGCCTCCCATCTCCCTGGAGGAGTGTCGGCAGTGTGTGCATGACATTCACTACTGTATATTACTGTACGCATTCTGGGGAACCTGACCTTAGTCCCTGTGCTTTCATGCAAGCATTCTTGCCCAGGGAGCTGTCTCTCAATCGGGTTGTTTGCAACTTCACTTCATTTTTGCTAGAGCCACACTCTGGTGGGAGCTCTGCTCTTCTGTGACTCCTCCCCTCCAGCTGATCTCAGCTTTTCTGACAACAGAAGGGAAGCCCCTCCCCTCTGTGCCCATCTCAAGTCTTGCTTCACTTCATTGCATAAAGACAACTCAGATATATTGCAAGTTGTTGCTTTTTATTGTTTCCTCTTATGGGATCTAAGGAACTGTAGGGGACAAGGCCAAGGCTGTCCTTCCCATCTCCAAAGGGACTGCTCAGTGACTCCTGGAGACTGGCAGCCCTGCACCCCACCTCCTATGCTGTCCCACCCTGCGTCCCACCGCCCTTGCATTGCACCCTTGGTGTTCCTGTGCCTCTCCAAGTGCTTCTGGGTTTCTCACTACCCCTGCAACCAGACAGACTGGCCCTCAGGTAAACTCATGAGTGTGTCCACTTCCCAGCCTGCCTGTGGCTCCCAGACCTATTCTCAGACCTTGACATTGGGCTGCACTGGATTGTCACCCGCTTCTGGGCATGACTGCAGAGCTTGAGATGGTCTTAGGGTGGTAAGTGTGTGAGCTGTTGTTAACACTACGCCCTGCCTTCCAGTCACATGCTTATCTCTCACCCTTGCACCCCATCTAGGACACCTCAGTGTGAAGGTAATATCTGTTTACCATGGAACGTCTGTCTGAGTGGTCTAACAGTGGTATGTAGATGTGTTCCTGATAGTGCAGAATGTGTTAAAGTCTGCAAGCAACTTAACCTTTTAATAACCCACACTCGAGCTCTGAGGTTCTGCTCTAGTGTGGTATCAGAGGAAGACGGGTATGGCAGTCCAGCTTGTCTCCACGGGTGTCCTGTACCGTCTGGTTCAGCATCCAGTGCATGCAGACCCGGGGCACCTGAAGTACTTGCCAGTCAGGCTCTGGTCTGTACTTCCAGAACATTGCTGAAATGGCAAAGTTGTCTCTGCTAGTACAGTTCCTCTTCTACCTTATTTGTGCAACCCTAAAGTGAGGTTAAGATTTGGTGCTGGCCAGTTTTCAAAAGGAAACAACTTTGGAAGTTTCTCTGGAGCAAGAGTACTAGAAAAGCTACCCTCTGTGGTGCCTGCTATGGGTTAGCTCATTCATTCCTTGCTGCAGCCTTGAGAAAGCTAGTTTTTACTTTGGACTTCATTTTGCTTTTTTGCTCTTGGGTGGGTTTGGACTTCTGGGCTCAAACCATTCTCTTGCTTCAGCCTCCAGAGTATCTAGAACATTGCTAGGACAATGCTGAGCACCATCCCTGCTTAGGATCTTAGGTTTCACTAAAGGGTCTGTGGTGGTTAATATTTATCATCAATCTGATAAGATTAACATCACCATGGAAACACACCTCTGGGCATGTGTCCAGGGAATATCTAGATTATGGTAGAGTGGGAAGTCCCACCCTAAATGTGCGTGATGACAATTCATGGAGAAAGGGACCTGAGCACAGACATCCGTCTCTGCTTCCTGAATGTGGATGTGTGACCAGCTGTAGCCTGATCCTAACTTATACCTTCCCTGCCATGATGTCTGAACCCCAAAACTGTGAGCCAAAATAAATTCTTCCTTTAAATGGTCAGGAATTGTTCTGTCAACAGGAAAAGTAACTCAGGCTAGTCAGGTCACACCTGTCATTCTTGAATTCAGTGGATGAGTTTGGACAATACAGAAGGTTGTAGTGATGGAGCCTGGCTGGCTGCCTCTGTGCCATCCTCACAAGGAGGCTTGCTGTCGTGTGTACTGTCTCACAGCAGACTCACCCACGTGCCCACTGTGAATGGCACTGACAGAAGCCACCTGCACACATCACTATTGCCCAGGCTAGCCCAGGAACCTCGTACCCATACAGACCACCCTATCACTGTATTTTTTTCAG
Seq C2 exon
AACTGCCGGGAAAGCGGGGTGGACCCCAGTCAAGTCCTCCTAAGCCCAGATTCCAGTGAAGCCGCCCGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCAAAGGAAGGGAGAGGAGGAGAATCCAAGTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-Spag1:NM_012031:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: