RnoINT0141951 @ rn6
Intron Retention
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75048366-75052041:+
Coord C1 exon
chr7:75048366-75048492
Coord A exon
chr7:75048493-75051897
Coord C2 exon
chr7:75051898-75052041
Length
3405 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTATGAACTTATTTTTTAGAAT
3' ss Score
7.94
Exon sequences
Seq C1 exon
GGCTCTCTGTTACTTGAAGCTGGGACAGTTTGAAGAGGCAAAGCTGGACTGTGACAAGGCACTTCAGATAGACAGCAAGAATGTGAAAGCCTCTTACAGACTCGAGCTCGCCCAGAAAGGACTCGAG
Seq A exon
GTGAGGGCATGTCTGTCTTGGTGTGTAAATTTCATCTCTGAATAGATCAAGTGGTTTCATGAAGGTCAGGGTCATGACCTGAGAACAGGATTGACTCCTGGTGTACACTGACCTGCTCAGCAGCCTCGGCACAGACTTCTAGTTGTCACCCTCGTCTCTGGTGTGGGTCAGGTAGTTTCTAAGCTCCTGTCCAGCTCCATTTCAGGCTGTAGTGAGCATTTTGGCTACAGGTTTCCAGCCCTACTTTCCTAGGGTGTCAGGGAATGTTCACTTAGGAGAGATGGCTTGTTGCTGTTGTGTTACTGTGTAAATACGGGGGACTTCCAACGAAAAATAGGATTAAAACAACAAAAACTAGCAAGGCCCTCGGGTTCCAGCAGAGCCGGAGGTTGGAGGTGGAACACCTGCTGGAGTGTGAGCCACCCAGTGGAAGCTTGGAGAACTGCAGCTGAGATTTAGATGCCTACAGGGGCCTGGGCCCTGAGCTAGCTTAGCTGATGGCCTCTGTAGGACTAGAGTGGCATTCTTCTCGTACCATATTGTGAAGAAAGAAGGCTCTGTATAGATGTGCTTTCCTTATGCTAGCTCTCCTCGAATGGGAATCGTTTTTTCCCTTCTGTTTTACAAATATAGGGTGTTATGTAGCCCAGGCTGAGCTCTCACTCTAGATGGTGGAGCCTGGCACTGAACTTGGTTCTCCTGTCACCATCTCCTAGGTGCTGTTCCACATAGAAATAAGGGTCACTGAATGTTCAAGTGTGGGGAAAAACGTTACTGGATGTGGCGGCTTGAAAGAAAACGGCCTCTACAGGTCCATGGGGAGGTGTGGCCTTTGTTGGAGGAAATGTGTCACTAGCAGGTGGACTTTGAGTTTCAAACACTCAAACCAGGTCTAGAGTGACATTCACTTCTTGCCTGTTAAACTCTCAGCTCCTTCTCTAACACCGAGGCTGCCTGCATGCTACCACATTTCCTGCCATGACTAAATTTCTGACCTGAAAGCCAGCCACAATTCAGTGCTTTCTTTAACAAGAGCTGCCCGCCGTGGTCGTGGTGTCTGTTCACAGTATTCACTGTTCACAGCTCACAGGTCATGGTGTCCTGTCAGCACAGGACGAACTCCTGAGATGTTTGTGGGGAGGGACGTTACAGCCCGTCAGTACAGGACAAACTTCCTGCGATGTGGTGTGGGGCAGAAGGCCCGATTCACACAGGGTTCACTCTAGCTCAAGGTGGTCTGGAACTCAGTATGTAACTCATGCTGGCCTCAAACTGGTGCTCTCCTGCCTCAGCTTCCCAAGTACGAGGAGGGCAGTTGGTACATGCCCCTGGCCTCTTTCTCCTCTTTATCTCCCCTGTGAGTGTTCAGATGTCTACTTCATGGGCAGCCATCAATCCCACAGGGATAGAAAGCACCTCACACACCTCATTTAGAACTCTCTCCAAATATGGATGCATCCTAAGGGATTATTGGCTAGAACTTCAGCTATGAGTTGGGAGAGGAAGGACACAAACCGAAGCTGCAGGTGAGGTGTTACCTCAGGGTTATTTGAAGGTGACATTGGGAGGACAATAAGTATAAAGTTTGTGTGTATGGGGGTGCCTCCTAGGCCTCGGAGGTGAAGAATAGCCAGATTGGGTGGAAGGTAGTTTTGATCTGTTTAATGTGGGAGTCCACTTAACTCCCTTCTTGTCACTGAATGGGAAATGTGGAGGGTTTGTGCACCAAAGCAACAGTTCTCTGCTAGTCCTGGCCTATCAGGCAGCTCTGGATCCCACATCCTCTCAGGCTGCCTAGAGCCAGACCTGTGCCTCCAGCAGCCAGGACAGATGCAGCCATGTGAGGTGGTGGCTGTGGCACACACTGATTCTGTTCCTCAGCCCTCCCCTCCCCTCCTTACTGGGAACATACTAATCTATAAGCCTCACATAAAGACCCTTTAGTTCAAGAGACTTCTTCACTACTGACTTACTCTATGGCTTTGGGCCAGTGTGGTGCACATACACTGGAGTGGGGAAGGAAGGGAGAGAGGCAGGGACGAGGGAAGTTTCCCTCCCTCCCTTCCCTGTTCCTGCTTCTCCCTCTTACTTGCCCACTCCTGTGTATGCACGCCTGTGCATGCTCACACGAGTGTGCAAGCACACGTGGAGGTTGGAGGGTAGCCTCGGCAGCCAGTCTTCAGCTTTTATGGTGTTTGAAACAGGGTTTCTCATTCACCGGTGTGTGTGGCACAGTGGACTGGAAGGCTTACAGGCATCCTCTGGACGCTGCCTCCCGTCTCCCTGTAGGAATGTCAGGGATGTGTGCATGGTATTCACTACTATACATTACTGCCCGTGTTCTAGGAAATCTGGTCTTAGCTCCATGCTTTCTTTCACGCAAGCATTCTTGCCAAGTAGCCGTCTCCCAACCTAGTTGTGTGCAATTTCATTTTTGCCAGAGCCACTCTGGTTGAAGCTCTGCTCTTTTGCCGGCCCCTCCCCTCTAGCTGGTCCCGCTATTCTGACAACCAGAGAAGGGAAGCCCCTCCGTTCTATGCCCATCTCAGTCTTGCCTCACTTTATTGCATCAAGACAACTCAGATATACTTGCAAGTTGTTGCTTTTTATTGTTCCCTCTGATGAATCGGAGGAACCTCAGAGGACAAGGACAAGGTTGCCCTTCCCATCTCCTCATTCCCATCTCCAAACAAAGGGACTGCTCTGTGACTACTGTGGACTGGCAGCCCTGTGCCCCACCCCCTCTGCTGCCCCGCCTCCTCTGCTGCCCCGCCTCCTCTGCTGCCCCGCCCTGTGCCCCACCCCCTCTGCTGCCCTGCTCAGTAGGGTCTGTGGTGGTTAATATTTATCATCAGTCTGATTAGATTCAGCATCACCATGGAAATACACCTTTGGGCGTGTTTCGGGGGATTATCTAGATTATGGTGAAGTGGGAAGACCCACCCTGAGTGTGGGTAATGACAGCTCGTGGAGAAAGGGAGCTGAGCACAAACAACCCTCACTGCTTCCTGAGAGAGTATGGTGGGCTACAGCCCGCCCCAAACTCACACCTTCCCTGCCATGATGACTGAATCCTGAAAATCGGAGCCAATTTTAGGAAAAGTAACCCGGGCTAGTTAGCTCACACCTGTCTTTCTCTCATTCAGTGGTCAGTGGATGGATGAGAGTGGACGACACAAAAAGTTGCAGTGATGGAATGGAGCCTGCCTGGCTGCTGCCTCTGGGCCGTCTTCACTGCAATGGAGGCTTGCGGTCATGTGTCTCACGGCATACTCACCCACTTCCCACTGTGAATGGCACTGACAGAAGTCATGTACACGCCCTGCACTGTCAACTGTAGCCTAGGCTAACCCAGGAGCCTCAGCCTTGTACCCATGCAAACTGTCCTATGAACTTATTTTTTAG
Seq C2 exon
AATTGCCGGGAAAGAGTGGCGGATCCCAGTCAGGTTGTCCTCCTAAGCCCAGATTCCAGTGAAGCAGCCAGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCAGAGAGAGGGAGAGGAGGAGAATTGAAATCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078:ENSRNOT00000013801:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]