HsaINT0157151 @ hg19
Intron Retention
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101199348-101203724:+
Coord C1 exon
chr8:101199348-101199478
Coord A exon
chr8:101199479-101203617
Coord C2 exon
chr8:101203618-101203724
Length
4139 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
TTATATTGGTAAATTTTCAGCTC
3' ss Score
4.65
Exon sequences
Seq C1 exon
GAGCATATCAGCGCTTCCCACTGTAGTTGCCTATAACAATCGAGCTCAAGCAGAAATCAAATTACAGAACTGGAATAGTGCTTTTCAGGATTGTGAAAAGGTCTTGGAGTTAGAACCTGGAAACGTAAAGG
Seq A exon
GTAAAAAATATTATAGAATTCTTTTACATTTACAGCAGGATCCATTAATAAAGACCATTTGTAGATACTTGTAATGTTTACATTAAAAATATTTCAGATAAACTCAAATTTCTGTATGTGAATCACCAACTTCATAAAGTTGCTTTTAAATTGAACTTGTAAGTTAAGCTCCTGATTATTTGTACTGAAGTAGCTAATAATCCCAGAGGATTTAATAAAATACATATATATTTTAAAGAAGTATCTCAATAAACAAAAAACCAACAACAACAAAAATAAAATAAAAGAGAAGTATCTTGGCCAGGCACAGTGGCTCACACCTATAATCCCAAAATTTTGGGAGGCCGAGGTGAGACGATTGCTTGAGTCTAGGAGTTTGAGACCAGCCTGGGCAACACAGCAAAACTCTGTGTCTCAAAAAAAAAACTCAAGCTTGCATTTGAACATTCTTTTTCTCCAAAAAAAATTAAGTATAACTTAATATAGATTTTCTGGTATTTATAAATATAATAAAATAATAAGCCCACACTGGACCTCTAGAACCTTCTCCCAGCTTCTTTGTGGATATTTCCACCTAGGTGGCTATATATAATTTTGTTTGTTTGTATGTTTGTTTTTTTGAGACTGAGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGATTCAAGTGGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTATAGGCGTGCACCACCACGCCTGACTAATTGTTGTATTTTTAGTAGAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCTTCAGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCTACTGCTCCCAGCCTGTTTTTGTTTTTTTGAGATAGGGTCTCACTCTGTCACCCAGCCTGGTGTGCAGTGGTGCAATCTTGGCTTACTGCAACCTCCACTTCCCAGTCTCAAGTGATCCTCCCACCTCAGCCTACCAAGTAGCTGGGACTACAAGCACGTGCCACCACACCCAGCTAATTTTGTTTGTATTTCTTGTAAAGATGGGGTTTCACTGTGTCGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCTGCCCACCTCGACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCAAGCCTGGCCTGCTATAAATAATTTAATTTTCATTTTAAATTAATAATTTGAATAACTTAATTCTAAATTAAATTTGTCCAAAACTGACTCTTTCTGCCAAAAACCTGCACTCTCTTTTGATTCCCTGTCCCTCTGACTGACCACCTTGTCATGGTTCAGGCCTGAAATATGCAAATCAGACTCTATTCTCCTTTTCTGTTATCAAGAAGGAGTCATTCCAAGAGGGAGTGACATACATTATAATAGACACATTATATTTCTTTAAATTTTTATGGATTCAAATAAATATAAACACTTTTTTCACATGGAATGTATCCCTTTTTGCCTATAAACATGGTGGAGGTGGCAGAAGCCATGGGAGTGCTAAGGGGAAGCCTGGTGCATCACCTGCCACTGTCATTGCCATGGATTGCCCTCCATTTACCAATAAAGTCCTGTTGGGCCTGTGTTTTACGCAAGCTGGTCTCTGTCACAGAGTATGGCTGGGCTCCCAGCTTTAGGCAGCAGCCCACTGAAGGTTTTGCCAACCCCATACCACTGCTCTGCCAGGCCCCGTGCCAAGCACTTTACATGTATTAACTCTGTTAATTTTAACAAAACTCTCGGCCAGGCTTAGTGGTTCATGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTTAGGAGTTCGAGACCAGCCTGGCAAACATGGCAAAACTCCATCTCTACTAAAAATTAAAAAAAAAAAAAAAATGGAGGGGTGCAGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAATGTGGCGAAACTCCATCTCTACTAAAAACACAAAAAATTAGCTGGGCATGGTGGCAGGCACCTGTAATCCCAACAACTTGGGAGGCTGAGGCAGGAGAATCACTGGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAACGAGAATCCATCTCAAAAAAAACCATAATAAATTTTAAAAAAAATTACTAGACATGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCCGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGTACTGAGCTGAGATCACGCCACTGCACTTCAGCCTAGGGGACAAAGAAAGACTCTGTTTCAAAAAAAATAAATAAATACAGAATATGTTAGCATTAGGTAAAGCTGAGTTAAGGGACACAGGAACTCATTGTACTATCTCTGCAACTTTTCTGTAAATCTCCAATGATTCCAAAATAAAAAGTTTTAAAAAAGGATAATCATTATGTCATGAATATTTCTTCATAGAAATTCCCTTCAGAAATCTGTGTAGCAATAGCAATAGCTAAATTATATTTAAAGTGCAGTGCTACAATTTTAATTAAATTTATAACAAAATGATTTCTCATTTAGATTTTCATAGCTCATTCTAACACTAAAATTCAAATTGGTCAAATTTATAATTATGTTTTAAAATAGCATATTAAAATATGTCAGATAAAATTTCTAACTTTTCAGGCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTTGGGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACCAAAAAAAATTAGCTGGATGTGGTGGCATGAGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCATGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAATTCTCACTTTTCAGAATTACCAAACTTGATTCTTTTTCAAAGTAATGACTTATTACACAAAGTTCTCCTTATATAATAGTTAATGATGAGTCTAGAGAGGCATTCATTGTCAGTATTAAATAATTACCAAATTATACATTGAAACGTACCCAAAAAATCAAATGCGAATTATCAAAGTGCTTAATTTCTGACCTAACTGACTTAATCATCAGGATTCTCTCAGTTCCCTATGCTAAGTCACTCCTTCTAATCATTTTAGAGATTGCTATACAGATGTCACTAATGAGCCACATTCTGAGCTAGATGCTGGTCAGTAATATACTTTTTTTTTCTTTTTTTTTTTTTTTTTTGGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGCACAATCTTGGCTCACTGGAACCTCCACCTCCCAGGCTCAAACAATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGATTACAGATGTGTGCTACCATGCCAAGCTAATTTTTTTTTTGTATTTTTAGTAGAGATGGGATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCTGCCCACCTCAGGCCCCCAAATTGTTGGGATTACAGGTGTGAGCCACTGTGCCTAGCCAATATACTAAATTTTGATAAGGGATTTTATGTTTTCAAAAAGTGGCTAAATAATACTCGCCATAATTATAAAAAGGAAAGGATTATTATCAGTGAAAATCATTCCGATATTGCAATACAATGTGTTGCCTGTGAAGGGTTGAGGTATGAAATCTCTTAGTTCTTGGAAAAGCTGGCGGGGCCTGGGGCTGCCAGAGGGCCAGAGGGTTGTTATAGAGGGGACAGCTGGCTGATGTAGCCTCTTTTATGTACCTCAGTGTCATCTCCTATGTGTGTATCAACATGAAAAAGGGTGTAGTTGAGCTTTGGGTAATTACATCCTAAAGTATTCTGTGCTGCTCATATCTTCCACTTGCCAAATATGTTGTAACCATAATGCCACATATTAAAAAACATAACTTTTATATTGGTAAATTTTCAG
Seq C2 exon
CTCTTCTGCGTCGTGCTACTACATATAAACATCAAAACAAGCTCCGGGAAGCTACAGAAGATTTGAGTAAAGTACTAGATGTTGAGCCTGATAATGATTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450-SPAG1:NM_172218:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(59.1=86.7),PF0421213=MIT=PD(53.6=66.7),PF0051523=TPR_1=PU(5.9=4.4)
A:
NA
C2:
PF0051523=TPR_1=PD(91.2=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)