MmuINT0150801 @ mm10
Intron Retention
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36195376-36197844:+
Coord C1 exon
chr15:36195376-36195506
Coord A exon
chr15:36195507-36197737
Coord C2 exon
chr15:36197738-36197844
Length
2231 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTATCTTGGTACATTTTCAGCTC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GAGCTTATCAGCCCTTCCCACCGCCATTGCCTATAACAATCGAGCTCAGGCCGAAATCAAGTTGCAGAGATGGAGCAGTGCTCTTGAAGACTGTGAGAAGGCCTTGGAGCTAGATCCCGGAAACGTAAAAG
Seq A exon
GTAAGCAGGCAGTGAGTGTCTTGTCTCAGGTCCAGCAGCCCACCTGAGGTACTTTGTGATGCTGCTTCTTTCAAAAGAAATAGTAGATGTGGTGGATGGAATGTTTGACCCATGGGAAGTGGCACTATTAGGAGGTGTGGTCTTGTTGGAGGAAGTGTGTCACTGTGGAAGTGGGCTTTGAGGAACTATGCCTAAGCTCCACCCTGTGGAAGAACCTGTGGAAGACAGTCTCCTTTTGCTGCCTTAGGATCCAGATGTAGGAGTCTCAGCTCCTTCTCTAGCACCATGCCTGCTTGTGCACTGCCATGCTTCCCACCATGACCATGATGGACTGTGTGCCTTTATAGGAGTTGTCTTGGTCATAGTGTCTCCACAGCAGTGGAAACCCTAAGTCAGTAGTGGGGAACACTGTAAACTGCAGTTGTCACCTAGTCCTAGCACATATCTTAGTCCTCTTAGCAGTCCACTAGCTACTAACAATACAACTAAACCCCACGCCCTATCATCTTATTGACTTGCCAATACATGCACCACAATGTGTTCTTTATAAGGCTAAAACTACATTATATAGTGAGGGAGTGTTGTGTAATTCCCAGTTATGCATTGATAGCATATTAAAACATATTTGACACACTGTTACATCTCAGAATTATTGAGCCTGATTTTTTTCCCTTAAGATACCATTTTACTATGTAAAGTTCTCTCATATAAGGGACCAAGGGACTAGAATGGTACATTGTTAGTATTAAATGATTATAAAATTATAAATTGAAATGTAAAAAAAAATACTGACACAATATGCCAAAGTGCTCAGCTCCTGACCCCTGCTGATGTAGTCACCACATGCTAAGGTAACTTTGGATTGTTTTGGTTTGGTTTAGTTTTTTGTTTTGTTTTGTTTTGTTTGTTTTGAGATAGGACCTTACTATTTTCCAATTCTAAGGAACTAGGATTTAGGCCTTTCCCATAACTGACATAGCCAGCTCTGATCATCTTAGAAATAGCTGTGCAGAGCTGGGTGGCAGGGCCATGCCTGGGAGTCCAGTTCTTGGGAGACAGACTCAGGGGGACCAGAGTTCAAAGGTCATCCTTGCCCGTACAGGGAATCCAGAACCAGCCTATGCTATTGAGACCCTGTCTCACAACACTAAACCAAATCAAGCCAAACACAAGCAACTCTTCCCACCACTACCAAACAAAAATAACTGGTTAAATAGAGCTCACTAATGCACTGTATCTGTCCTTGGCCAATCAGTGCCTACAGCATCTCCACAAGCTATGTCCTAAGTTTCCAGAAACAATGAGCTAAGAGCAGTGGCGACTGAAGGAAGCCAGGCGTTGCTGTTAGTGAGCGGTTCCCCCGTGCGGCAGCACGGTGCAGGGCATGGGAAACAGGCAGAGACAGCGAGTGGCAGGGCCAGGATGTGAGACACCCCGATTCTTACAGAGGCTGGAGCTGCAGAGGAAGGTCAGTTCTCTTCTGACGCAGCCCCCGAGAGGAGACCCTGTATGAGTTACTTTTCTTTGCTGTGATAACGCCATGACCAAGGCAGCTTAACAGAGAAGGAGTTTGTGAGTCCATCCTGGCAGAGAGGCCTGGCAGGAGGAGCAGACAGTGTAGCACCCACAGCTTTAACTGTGAGTAGTCTTTAACTGTGAGAAGGAGGATGATGCTTTCTACGCTCAAATCACAATCCCACCGTCTGTCCACCAGGAAAGCTGCTGCACCTCCTACCCTCCCCCAAACAGCCCCACCAACTGGACCAAGTATTCGAATGCCAATGCCCATGCGACATTTCTCCTTCAAACCACCATGTTGCTCCTGCGTCGGTAGATAGCCCTACACCTACACACATTCAGACAGCACTAGGTGGACTCCGTCATTTTTTGTTTTTTTAAAAAAAGAGTACATGAAATGAGGAGTGAGAAGTTTTTAGGAGGAAAGAATCGGAGGGAAGAGGGGAGAGGGTAGATTTGACCGAAACATGATACGTATGCTTGTATGGGAGTCTCAAGGAATTTAAAAAGCAGGCTGCTACCCGGTGAAGCGTCTTCTGGTATGGCAGGGTCGTGTATGTGCCATCACACGGACCTGGGGGTTCAAGCTCCACCTGCTTGTGTCTTGTGCTTCTTATACTTACTTTCCTTCTTGTTGGGAACGTGTTCAAACTGTGTTGACGCTCTCATGGTACATGTTAAACTATCGAGCATTTATCTTGGTACATTTTCAG
Seq C2 exon
CTCTCCTGAGACGAGCCACTACATATAAACATCAAAACAAGCTCCAGGAAGCTGTGGACGACCTGAGAAAGGTGCTGCAGGTGGAGCCGGACAACGACTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617:ENSMUST00000047348:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.639
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(59.1=86.7),PF0051523=TPR_1=PU(5.9=4.4)
A:
NA
C2:
PF0051523=TPR_1=PD(91.2=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types