RnoINT0141960 @ rn6
Intron Retention
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75014402-75016941:+
Coord C1 exon
chr7:75014402-75014532
Coord A exon
chr7:75014533-75016834
Coord C2 exon
chr7:75016835-75016941
Length
2302 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
TTACCTTGGCACATTTTTAGCTC
3' ss Score
5.2
Exon sequences
Seq C1 exon
GAGCTTATCCGCTCTTCCCACTGCGACTGCCTACAACAATCGTGCTCAGGCCGAAATCAAGCTGCAGAGATGGAGCAGTGCTCTTGAAGACTGCGAGAAGGCCTTGGAGCTGGAGCCTGGGAACATAAAAG
Seq A exon
GTAACGAGGCAGCAAGTACCTTGTCTCGGGTCCAGCAGCCCACCTGAGGTACTTTGTGATGCCACTTCTTTCAGAAGAAGAAATAGTAGTTGTGGTTTGAATGTTTGACCGAAGGCAAGTGGCACTATTAGGAGGTGTGGCCTTGGAGTGGGTGTGGCCTTGGAGTGGGTGTGGCCTTGTTGGAGGAAGTGTGTCACTGTGGGGATGGGCTTTTGAGGAATTGTGCATAAGCTCCACCCAGGACAAAAGAAAGCCTCCTCCGGTGGAAGAGCCTGAGGAGGACAGTCTCCTGCTGCCTTAGCATCAAGATGTAGAACTCTCAGCTCCTTCTCCAGTACCGTCTTGGCCTGTGCACTACCATGCTTCCTGCCATGATGATAATGACTGAACACCTGAAACTGTAAGCCAGAGCCAATTAGATGTTTGCTTTTATAAGAGTTGTCTTGGGCACAGTGTCTCTTCACAGCAATGGAAACCCTAAGGCAGTAGTGGAGAACGATGTGAGCTGCAGCTGTTACCTAGTCCTAGCATGAGTGACAGTCCTCTGAGCAGTCAGCTACCTAGTAACTACCTAATAACAAACCTGAAACCTGTAATTTTGTTGAGTTGCCAATATGTACAACACAGTATGTTCTTTATAAGGCTAAAACTAAGTTCTATAATTAATTTCCAGCTATTGATAGCATATTAAAACATTTGACACACTGTTTCTTACATTTTAGAATTATTGAACCTGATTTTTTTTCTCAATATACCATTTTACTATGTAAAGTTCTCTCATATAAGGGACCAAGGGACTAGAATGGTACACCGTTAGTGTTAAATGGTTATAAAATTATAAATTGAAATGTACAAAAAAATACTAACACAAAATGCCAGAGTGCTCCATTCCTGACCCCAGCTGATATGGTCACCAGGACCACATCATGGCTCTTCTTCATGCTAAGTTAACTTTGGGCTGTTTTGGTTTAGTTTCCGTCTTTGTTTTGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAGACAGGCCCTTACTATATAACTCAAGCCAGCCCAGACTTCCAATGCTCCCACCTCACCCGCATGAAAGCTGGGATTTAGGCCTTTCTTACTGCCACAGCCAGCTCTGATTATTGTAGGATTAGCTGTATAGAGCTGGGTGACATGGCCCATGCCTGTTATTGCATGGCAGGTAGGCTCAGGGGGACCAGAGTTTAAAGGTCTTCCTTGGCTATACAGTGAGTTCAAAAGCAGCCTATGCTATGAGACCCGAAACACTAAACCAAATCAAGCCAAACACATGACCCTTCTCACCACCACCAAACAAAAGTAACCGGCTAATATGTTTTATCTATCCTTGGCCAGTCAGTGCCTACAAAATGTCTACAAGCAATCTCCTAATAATGAGCCATGAGCAGTGGCGACTGAAGGAATGCAAGCATTACTGTCCCGTGAGTGAGCAGTTCCCTGCTGTGGCACAGGGCAAGCACGGGGCAGGGCATGGGAAAGGGGCAGAGCCCAGTGGCAGGTCCAGGCCGTGAGTAGCCTCGGTTGTTACTGCTGAGGGAGATCAGTTCTCTTCAGATGCAGCCCCCGAGAGGAGACCTGTGTGAGTTGCTATTCTTTGCTGTGATAACACCATGACCAAGGCAGCATAAGAGAGAAGGAGTTTGTTTGAGATCATCATGGTAGAGAGACCTGACAGAAGGATCAAGCAGTGAAGTGCCCACAGCATTAACTGCAAGCAGTAGAGAGAGCCAGGTGGACATAGGATGAGGCTTTCTCTCTCACAGTCCCACCGTCGTCCACCAGGAGGGCTGCTGCACCTCATAAACCTCCCCAAATAGCCCCACCAACTGGACCAAGTAGTCGAATTCCAATGCCCCCAGGGACATTTGTCCTTCAGACCACCATGTTGCTCCTGCATCAGTCCCTAGCCCTACACCCACCCACATTCCGATAGCACTAGGTGGACTCTGGGTTTTTGTTTTTTAAAAAGGTGCACATGGAATTGTAAGTGAGAAGCTGTTGGAAGAAAGGACGGAGGGAAGGGGGAAAGGGTGGATTTGACCACAGCATGATACTCGTGTATGGAAGTCTAAAGGAATTTAAAAGGCAGGCTGGTACCCAATGAAGCCTTTCTGCACATGGCAGGGTGGTGTCACATGCCACCACTCGGACCTGCTAGTGTCTCGTGCTGCTTATACTTTGCCTCTTGCTGGGAACGTGTTCAAACTATGTGACACTACCATGGTCCATGTTAAACTACCGAGCATTTACCTTGGCACATTTTTAG
Seq C2 exon
CTCTCCTGAGACGCGCCACCACATATAAACATCAAAACAAGTTCCTGGAGGCCGTGGACGACCTGAGAAAGGTGCTGCAAGCAGAGCCTGACAACGACCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078:ENSRNOT00000013801:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.472
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(59.1=86.7),PF0051523=TPR_1=PU(5.9=4.4)
A:
NA
C2:
PF0051523=TPR_1=PD(91.2=86.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]