BtaINT0139380 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66372139-66375910:-
Coord C1 exon
chr14:66375780-66375910
Coord A exon
chr14:66372246-66375779
Coord C2 exon
chr14:66372139-66372245
Length
3534 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
TTATTTTGGTAAATTTTCAGCTC
3' ss Score
5.65
Exon sequences
Seq C1 exon
GAGCTTATCCGTGCTTCCCACCGTAGCAGCTTACAACAATCGTGCTCAAGCAGAACTCAAACTGCAGAACTGGAACAGTGCTTTTCAGGACTGTGAAAAGGTCTTGGAGTTAGAACCTGGGAACTTAAAGG
Seq A exon
GTAAAAAGTATTCATAGAATACCTTTAAATTTGCTGCACCATCTGTTGAAGGTCATCTGTAGATACTCATTATGTTTACACTGCTGCTAAGTCACTTCAGTCGTGTCCAACTCTGTGTGACCCCACAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGACTCTCATGGCAAGAACACTGGAGTGGGTTGCCACTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTGTCCAACCCCCAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCAATGTTTACACTAAAAAAAATTCAAATAAACTCAAATTTCTATATGTGAATCATTACCTTCCTCAAGTTACTTTGCATTTCAAGTTTAACTTCGGATTTAACTTTTTAATTACTTGCACTGATGTAGCTAGTAATCCCAGATGATTGAGCAAAGTGTACATGTTTTTGTTTTTACTTCTTTTTGGCTGCACTGGGTCTTCATGGCTGCCCGCAGGCTTTCTCTAGCCGTGGCGAGTGGGGGCTACTCTTCGTTGTGATGCGCAGTCTTCTCACTGCGGCGGCTTCTCTTGTTGTGGAGCAGGGGCTCTAGAGCACGTGGGCTTCAGTACTTGTGGTGCATGGGTTTAGTTCCCCTCAGCCTGTTGGATCTTATTTCCCCAACCTGGGATCAAACCCACGTTCCCTGCATTGGCAGCTGGATTCTTAACCACTGGACTACCAGGGAAGTCCTACATGCATTTTTAGAGAAATATCTCACGCTTGCATTTGAGCTGTAGTTTGTGGGGTTTTTGTTCCCTTTCAATTTTTAAAAAATTGTGGTAAAATTGACATAGCACAAACTTTTACCATCTTAGTCATTTTTAAGTACAGAGTTCGGTGGTCTTAAGTACATTCATATTGTTGTGCAGTCAGCTCTACTGTCCACCTTCAGAACTTTTTAAATCTTGAAAATGTACCCATGAAACAGCAACTCTTTATCCTCTCTACCCACCCCAGCCTCTGGCAACTACCAGTCTACTCTCTGTCTCTGTGATTTTATTATCCTAGGTACCTCATACAAATTAAATCATACAGTATTTATCTTTTTCTGACTGGCTTATTGAACTGTATCTTTTTATCTAAAAAATAAATTTAAATATGATTTTTAAATATTTATTAATAAGCTCACACCAGAGCTCTAGAACGTTCCACCAGCTGCTTTTTGGGTTTTCCACCTAGATGTCCATAGACCATTTGAAATTAAGTGTGTCCAAAGCTGACTACACCTCCCCACCAACACCCGCCCTCCATTCTGCTTTCCTACTGTACCTTCTTATGGTCCAAGCCTGAAGTATGCAAGTCAGACTCTGCTCTCCTTTTCTGTTACCAAGGAGTCATTCCGAAAGGGAGAGGCATAAATTATAATAGATTCATTCTATTTCTAAATACTATGGGTTCAGATAAATACAACCACTTACTTTTTTTCCCACATGCCTACAAACACGGGTGGGCAGAAACCATGGTGTGCTGAGGACGGATCCTGGTGCATCAGCCCGACTGTCATCGGCATGGATGCCCTCCCTTCCCCAGTAAAGTTCTTCTTTGCTTGTATGTTGTCTCTATCACAGCATATGGGTGGGGTCCTAGCTTTAGGCAGGTGCCCGGTCTCCACACGACCACTGTGCCAGGCCCTGTGCCATGCAGTACATATATTAACTCCATTACTTTTCACAACAGCTCAGTAACGGTGCGGGGACTGTTTTTAGTGGACTTGCCAGGTGGCTTAGTGATAAAGAACCCACATGCCAATGCAGGAGATACGAGTTTGATCCCTGGGTTGGGAAGATCCCCGGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAATCCCAAGGACAGAGGAGACTGGCGGACTGCACAGCCCATGGGTTCGAAAAAGAGTTAGACATGATTTAGCAACTAAACAACAACAGCTGTTACTAGCACACTCATTTTACAAAAGGACAGGGACATACTGAGGGACTGAACAACTCACCTAAGATCACCCAGCTGGTAAGTGACAGAGCCAGGACTTGACACTGGATGACACTCCAGAGTCCACATTCAACCACTGTGCTACTCTTCTGCACTAGAATGGTCTTCTGTTTTCATTTTTCCCCATTTGAATAATTTCTTAAGCACCAGAATCTTCACTATATAAAAAAACAAGTTTGACAGAGCCAAATCTAGTAATCAGTATGGCCATAAAACATTAAGAATTCTTAGATTTTCTTAAGAGGATAAATATCATCCTCTTTGAAACTTTATTTTTAACTCAAAAATTAATTGTTCTAAATGCAGCATAGTATATGGTTATAACCTGAAGCAGAAAATGGACATTAGTGGAAAAATTGGTGAAATCCACATAAAGTCTAATGTTTAGTTAACAATATTTCTTAGTTTTGGCAAATATATCATAGTTATGTAAGATGTTAGCCTTAAAGCTGGGTTGGGGTATATGAGAACTGTCTGTATTAGCTTTGCAACTTTCTGTAAATCTGAAATTATTTCCAAAAATAAAGAGTTTTTTAAAATGGTAATTGTTATATCATGAATATTTCTTTATGGACAGTTCCTTCTGAAATCTGAATAGGAACAGTAATAGCTCAATTTGTACTTATGCTATAATTTTGTTTATATTAATGATGAAATGATTTATCCTCTAGATCTTCCTGGCTCATTCTAAGACTAAAATCAAACTAGCCAAATTTATGTTTTAAAATAGTGTTATTAAAATAAATCAGATATAAATTACAGAATCAGATATAAATTCCAGAATTACAAAGCCTGATACTTTTCAAAATCATGGCTTACTACACAAAGTTCTCTTATGACATAATTAATCATGATTCATTTTAGTATTAAAAATTATCAAATTAGATGCTGTAACCTTCAAAAATTCTCTGATACAATTTACCAAAGTGTGCAATTTCTGAACTTAGCTGGACTTAAACACCAAGATTCTCTGTGTTCCTATTCATTTTAGATTGCTATAAAGACTTCACTAAGGACCCATATTCTGAGTTAGGTGCTTGGTTATTAATATAAATACCACATTTAAATGAAAGGCTTTTTAAGTTTTCAGAAAGTAGAAATAATAGTCATGATGATTATAAGGAGGAACATATTATTATTTAGTGAAGAGCTTCCCAATATTGTAGCACAGCATGATGCCTTCAAAGGGTTAAGATGTGGAGTCTCTCAGCCTTGGGGGAACTGGCAGAGCCTGGAGCTGTCAAAGGGCCAGGCTGTTGGAAGGGACAGTTTTTTATTGCAGCCTCTTCTGTTTGACCTCAGGATCATTTTCTGTATTTGTAAGAATCTTAAAATGGGTCTAGTTTGCACAATTGCATTCTAAATTCTTCCCCTTGAAGAATGTGTCATAATCAGAATGCCACATGTTAAAAAAATATAACTTTTATTTTGGTAAATTTTCAG
Seq C2 exon
CTCTTCTGCGCCGTGCCACCACATATAAGCATCAAAACAAGCTCCAGGAAGCTATAGAAGACTTGAATAAAGTACTGGCTGTTGAACCTGATAATGAGTTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544:ENSBTAT00000046176:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.417
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(59.1=86.7),PF0051523=TPR_1=PU(5.9=4.4)
A:
NA
C2:
PF0051523=TPR_1=PD(91.2=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development