HsaINT0159720 @ hg19
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130060008-130060589:+
Coord C1 exon
chr11:130060008-130060043
Coord A exon
chr11:130060044-130060348
Coord C2 exon
chr11:130060349-130060589
Length
305 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCTTCTTGTCTCCTGCGCAGACA
3' ss Score
9.94
Exon sequences
Seq C1 exon
CCACGGACTCCAAAACAGTACAGAGGACCCAGGACA
Seq A exon
GTAAGTATCGTGCCCGCCTCCTCTTCTGGGTGGGGAAGAGGCGGGATGTGGCCAGATGCCCTTGAGCCAGTGGGGTCCCCAGAAGCATGTCCCTCTGAATGAAGTATATTATGACGATCTTTCCAGGCCCTTCCTCTTCCAGGCCCTTCTGAGAAGCCCCCTTCCTGATTTCCCGAGGCCCAGGGCAGCCTGGGGCGTCTCGAAGGGGCGAGGCCTGAGGTCCACACCCACGGGGTCTCAGGGTCCTCCCCCAGCTCTGCCCAGCCCTGCCCCCACACGTGCCCTCCTTCTTGTCTCCTGCGCAG
Seq C2 exon
ACAGCTGCAGCTTTGGCCTGCACGCCCGCGGTGTGGAGCTGATGCGCTTCACCACGCCCGGCTTCCCTGACAGCCCCTACCCCGCTCATGCCCGCTGCCAGTGGGCCCTGCGGGGGGACGCCGACTCAGTGCTGAGCCTCACCTTCCGCAGCTTTGACCTTGCGTCCTGCGACGAGCGCGGCAGCGACCTGGTGACGGTGTACAACACCCTGAGCCCCATGGAGCCCCACGCCCTGGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-ST14:NM_021978:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(63.3=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGACTCCAAAACAGTACA
R:
GGCTCCATGGGGCTCAGG
Band lengths:
262-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)