HsaINT0159720 @ hg38
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr11:130190113-130190694:+
Coord C1 exon
chr11:130190113-130190148
Coord A exon
chr11:130190149-130190453
Coord C2 exon
chr11:130190454-130190694
Length
305 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCTTCTTGTCTCCTGCGCAGACA
3' ss Score
9.94
Exon sequences
Seq C1 exon
CCACGGACTCCAAAACAGTACAGAGGACCCAGGACA
Seq A exon
GTAAGTATCGTGCCCGCCTCCTCTTCTGGGTGGGGAAGAGGCGGGATGTGGCCAGATGCCCTTGAGCCAGTGGGGTCCCCAGAAGCATGTCCCTCTGAATGAAGTATATTATGACGATCTTTCCAGGCCCTTCCTCTTCCAGGCCCTTCTGAGAAGCCCCCTTCCTGATTTCCCGAGGCCCAGGGCAGCCTGGGGCGTCTCGAAGGGGCGAGGCCTGAGGTCCACACCCACGGGGTCTCAGGGTCCTCCCCCAGCTCTGCCCAGCCCTGCCCCCACACGTGCCCTCCTTCTTGTCTCCTGCGCAG
Seq C2 exon
ACAGCTGCAGCTTTGGCCTGCACGCCCGCGGTGTGGAGCTGATGCGCTTCACCACGCCCGGCTTCCCTGACAGCCCCTACCCCGCTCATGCCCGCTGCCAGTGGGCCCTGCGGGGGGACGCCGACTCAGTGCTGAGCCTCACCTTCCGCAGCTTTGACCTTGCGTCCTGCGACGAGCGCGGCAGCGACCTGGTGACGGTGTACAACACCCTGAGCCCCATGGAGCCCCACGCCCTGGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418:ENST00000278742:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(63.3=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGACTCCAAAACAGTACA
R:
GGCTCCATGGGGCTCAGG
Band lengths:
262-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains