RnoINT0144093 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32252459-32252970:-
Coord C1 exon
chr8:32252935-32252970
Coord A exon
chr8:32252700-32252934
Coord C2 exon
chr8:32252459-32252699
Length
235 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTGTCTTGTCTCTCCCACAGACA
3' ss Score
12.4
Exon sequences
Seq C1 exon
CCATTGACCCCAGAATGCTCCAGAGGACTCAGGACA
Seq A exon
GTAAGTATCATGTTGACCTCCGGTGGAGAAGAAAGGTGTCTTGCTAGATGCCCCTTCAGCCATGGGGTCCCCAGAAGTCAGAGGGTACTGATGGACTTTTTCCCTTCCCCTCGGAAGCTCCCTTTCTTGTGTCTGCCTGAGCTCGCAGTGATTTGAGATGTATCTGGGGTGGAGCTAGGCCCTGGGGTGGGGCCTGCGGGGTTCACGGCTTCCTTCTGTCTTGTCTCTCCCACAG
Seq C2 exon
ACAGCTGCAGTTTTGCCCTCCATGCCCGTGGCAGGACAGTGACACGTTTCACTACCCCTGGCTTCCCTAACAGTCCCTACCCAGCTCATGCCCGCTGCCAGTGGGTCCTGCGGGGGGACGCGGACTCTGTGCTGAGCCTCACCTTCCGAAGTTTTGATGTCGCGCCCTGTGATGGGCATGACAGTGACCTGGTCACAGTGTATGACAGCCTGAGCCCCATGGAGCCCCATGCTGTGGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(66.1=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGACCCCAGAATGCTCC
R:
CTCCATGGGGCTCAGGCT
Band lengths:
260-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]