MmuINT0153117 @ mm10
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:31106014-31106524:-
Coord C1 exon
chr9:31106489-31106524
Coord A exon
chr9:31106255-31106488
Coord C2 exon
chr9:31106014-31106254
Length
234 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCTTCCATCTCTCCCACAGACA
3' ss Score
11.12
Exon sequences
Seq C1 exon
CCATTGACCCCAGAATGCTGCAGAGGACTCAGGACA
Seq A exon
GTAAGTATCATGGTGACCTCTGGTGGAGAAGAAAAGTGTCTTGCCCCTTAAGCCATGGGGTCCCTAGAAGTCAGATGGTACTGATGGACAAGCATCTCTTCTTTTCCCCTTCCGGTCCAAAGCTCCTTTCCTTGTGTCTACCTGAGTTCGCAGTGATCTGAGACGTATTGGGGGTAGAGCTAGGCCGGGGGCGGGGCCTGCAGGGTTCACGCCTTCCTTCCATCTCTCCCACAG
Seq C2 exon
ACAGCTGCAGTTTTGCCCTGCATGCCCATGGTGCAGCAGTGACACGCTTCACTACCCCTGGCTTCCCCAACAGTCCCTACCCGGCGCATGCCCGCTGCCAGTGGGTCCTGCGGGGGGACGCCGACTCTGTGCTGAGCCTCACCTTCCGAAGCTTTGATGTCGCTCCCTGTGATGAGCATGGCAGTGACCTGGTCACCGTGTATGATAGCCTGAGCCCCATGGAACCCCACGCTGTGGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995:ENSMUST00000034478:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(66.1=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCCCAGAATGCTGCAG
R:
CACAGCGTGGGGTTCCAT
Band lengths:
270-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types